Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00915 ATGGCATTAGAAGCTGTTGTTTTCTCTCAAGATCTTTACTCCTTGTTTGCTGGAGGCCTCAGCTTTGAATATCCTCAAATCCCTCTTGATTTTCCCGAGAAACAAACAGAAAATCCGCCATTGGAGCTCGAATCAAGAACACCAAACCCAGTTAAGCCAAGAAAACGACGACCCAAATCCCGCAAGAACAAACAAGAAATCGAGAATCAAAGAATGACCCACATCGCTGTTGAACGAAATCGAAGAAAACAGATGAATGAATATCTCTCTGTTCTTCGTTCTTTAATGCCAGATTCATATATTCAAAGAGGAGATCAAGCTTCAATCGTTGGTGGAGCTATAAATTTCGTTAAGGAATTAGAACAACAAGTGCAGTTTCTCTCAACAGATTCAAGTTCTTGTTCTTCTTGTTCTTCTTCTTGTTCTTCATCTTCACAAACTCATAGCTCCTCCATTGCTGATATTGAAGTAACAATGGTGGAAAATCATGCAAATTTGAAGATCAGATCAAAAAAACGACCAAAACAGGTTGAAGATGACTGCAAGCTGAGCTCTGTTGATGAAATTGCTTGTGCTCTACATCAGTTGCTTAGTAGAATCGAAGAGGAATCTGTTATGAACTGA 624 38.78 MALEAVVFSQDLYSLFAGGLSFEYPQIPLDFPEKQTENPPLELESRTPNPVKPRKRRPKSRKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIVGGAINFVKELEQQVQFLSTDSSSCSSCSSSCSSSSQTHSSSIADIEVTMVENHANLKIRSKKRPKQVEDDCKLSSVDEIACALHQLLSRIEEESVMN 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8207044 8209407 + Cp4.1LG07g09050.1 Cpe07g00915 472722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00915 207 PANTHER MAX DIMERIZATION, MAD 177 207 - -
Cpe07g00915 207 PANTHER MAX DIMERIZATION, MAD 134 177 - -
Cpe07g00915 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 139 IPR036638 GO:0046983
Cpe07g00915 207 Gene3D - 54 135 IPR036638 GO:0046983
Cpe07g00915 207 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 120 IPR011598 GO:0046983
Cpe07g00915 207 SMART finulus 75 126 IPR011598 GO:0046983
Cpe07g00915 207 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 134 177 - -
Cpe07g00915 207 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 34 131 - -
Cpe07g00915 207 MobiDBLite consensus disorder prediction 31 69 - -
Cpe07g00915 207 PANTHER MAX DIMERIZATION, MAD 34 131 - -
Cpe07g00915 207 Pfam Helix-loop-helix DNA-binding domain 70 121 IPR011598 GO:0046983
Cpe07g00915 207 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 177 207 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00142 Cpe07g00915 CCT
Cpe07g00915 Cpe11g00947 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00915 Cpe-Chr7:8207044 Cpe11g00455 Cpe-Chr11:2566773 4.88E-52 dispersed
Cpe15g00206 Cpe-Chr15:1706960 Cpe07g00915 Cpe-Chr7:8207044 1.31E-22 transposed
Cpe11g00947 Cpe-Chr11:8017880 Cpe07g00915 Cpe-Chr7:8207044 4.21E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49787 PF00010 HLH 2.30E-10 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00915 - - cpep:111798037 302.367