Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00984 ATGGCGGATAAAGGCAGAGATGGTGGCTACTCGAGTTTACTCGACGGGAAGTACGAATTAGGCCGTCTTTTAGGGCACGGGACTTTTGCAAAGGTTTACCATGCTCGGAATCTGCGAACGGGGAAGACTGTTGCGATGAAAGTGGTTGGTAAGGAGAAGATAATCAGAGTCGGCATGACGGAGCAGATCAAGAGAGAGATCTCTGTGATGAAAATGGTGAAGCATCCGAATATTGTTGAGCTTCATGAGGTGATGGCGAGTAAATCGAAGATCTACTTTGCGATGGAGTTTGTGAGAGGCGGTGAACTGTTTACCAAAATTGCGAAAGGTCGGTTGCGAGAGGATGTGGCTAGGGTTTACTTTCAGCAATTGATCTCTGCGATTGATTTCTGCCATAGCCGTGGTGTTTACCATCGCGATTTGAAACCGGAGAATCTCCTCCTCGACGAAGACGGTAACCTTAAGGTCACTGATTTCGGCCTCACCGCCTTCTCGGAGCACTTGAAGCAGGACGGATTATTGCACACTACATGCGGAACTCCAGCATACGTCGCGCCGGAGGTCATCGGGAAGCAGGGATACGACGGCGCTAAGGCGGATCTGTGGTCTTGTGGAGTGATCCTCTACGTTCTTCTCGCTGGATACCTTCCATTTCAGGACGACAATATGGTGGCGATGTACAAGAAAATATACAGAGGCGACTTCAAATGTCCGCCGTGGTTCTCATCCGAAGCCCGACGTCTCGTCACGAAGCTTCTCGACCCGAATCCAGTGACCAGAATCGGGATCACGAAGATCACATCATCGTCATGGTTCAAGAAATCGGTACCGAAGGCTATAATTACGAAGGAAGAACAAGAACGAATCGAGGAAAATTTCACGAAATCGAAGCAACCAGCGGAGACATTAAACGCGTTCCACATAATTTCCCTATCGGAAGGGTTCGATCTGTCCCCGTTGTTCGAGGAGAAGAAGAGGGAGGACAAAGAGGAGATGAGATTCGCGACATCATCGCCGGCGAGCAGTGTGATATCGAAGCTTGAGGAAGTAGCAAAGGCGGTGAAGTTCGATGTGAAGAAGAGCGAATCATGGGTTCGATTGCAGGGGCAAGAAAAGGGGAGGAAGGGGAAACTTGCAATTGCGGCGGATATCTTCGCCTTGACGCCGTCGTTTGTGGTGGTGGAGGTAAAGAAGGACAACGGAGATACTCTGGAGTACAACCAGTTCTGTAGGAAGGAGCTCCGGCCGGCGTTAAAGGACATTGTTTGGACATCTCCGACTGAGAATTCGACCCCAGCTTGA 1302 50.0 MADKGRDGGYSSLLDGKYELGRLLGHGTFAKVYHARNLRTGKTVAMKVVGKEKIIRVGMTEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMEFVRGGELFTKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILYVLLAGYLPFQDDNMVAMYKKIYRGDFKCPPWFSSEARRLVTKLLDPNPVTRIGITKITSSSWFKKSVPKAIITKEEQERIEENFTKSKQPAETLNAFHIISLSEGFDLSPLFEEKKREDKEEMRFATSSPASSVISKLEEVAKAVKFDVKKSESWVRLQGQEKGRKGKLAIAADIFALTPSFVVVEVKKDNGDTLEYNQFCRKELRPALKDIVWTSPTENSTPA 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8907079 8908380 + Cp4.1LG07g09670.1 Cpe07g00984 472791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00984 433 PANTHER - 10 431 - -
Cpe07g00984 433 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe07g00984 433 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe07g00984 433 Gene3D Phosphorylase Kinase; domain 1 15 99 - -
Cpe07g00984 433 SUPERFAMILY Protein kinase-like (PK-like) 15 289 IPR011009 -
Cpe07g00984 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Cpe07g00984 433 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Cpe07g00984 433 CDD STKc_SnRK3 17 271 - -
Cpe07g00984 433 Gene3D Transferase(Phosphotransferase) domain 1 100 278 - -
Cpe07g00984 433 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 10 431 - -
Cpe07g00984 433 Pfam NAF domain 301 360 IPR004041 GO:0007165
Cpe07g00984 433 Gene3D Kinase associated domain 1, KA1 297 424 - -
Cpe07g00984 433 ProSiteProfiles NAF domain profile. 298 322 IPR018451 GO:0007165
Cpe07g00984 433 CDD CIPK_C 304 419 - -
Cpe07g00984 433 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00984 Cpe-Chr7:8907079 Cpe18g00559 Cpe-Chr18:6124703 0 dispersed
Cpe11g01018 Cpe-Chr11:8572895 Cpe07g00984 Cpe-Chr7:8907079 0 wgd
Cpe07g00984 Cpe-Chr7:8907079 Cpe07g01155 Cpe-Chr7:10112001 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62522 PF00069 Pkinase 7.00E-73 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00984 - K07198 csv:101208458 816.609