Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00999 ATGAAGAGCGATACCCATTTCACCATTCATTCTTTGCTGCAAATTTTCCTCTTCTTTGGCACTCTTTTGTGCCTAGCTTCTTCTGAAGAGCTTCTTCAAGTTTCCGGCCATGGCGGCGGCGGTGGACTGACCGATGCTGAAGCTCACTACATCCGTCAACGGCAACTTCTTTACTACAGAGATGAATTTGGCGACCGTGGTGAAGAAGTCACCGTTGATCCTAAGCTGGTTTTTGAAAACGACAGGCTTAGAAATGCTTACATAGCTTTACAAGCTTGGAAGCAAGCGATTCTATCTGACCCTTTGAATCTTACTCTTAATTGGGTTGGATCTGATGTTTGTAGTTACAAAGGGGTTTTCTGTGCTGAGGCGCCGGATAATTCCTCGATCCGTACGGTCGCCGGAATCGACCTTAACCATGGCGACATTGCCGGCTACTTGCCGGAGGAGCTCGGCCTTCTTGTGGATCTTGCATTGTTCCATATCAACTCCAACCGGTTTTGCGGCACTGTGCCTCACAAGTTTAAGCACTTGAAGATGCTGTTTGAGTTGGATCTGAGCAACAATCGCTTCGCCGGAAAGTTCCCTCGGGTGGTTCTCGAGCTGCCGGAGCTGAAGTTTTTGGATCTGAGGTTTAATGAGTTTGAAGGGACCGTTCCTAAAGAGCTTTTCGACAAGGATTTGGACGCTATTTTCATCAACCACAATAGATTCCGGTTTGACTTGCCGGAAAATTTCGGGAACTCGCCGGTTTCGGTGATTGTTCTTGCGAATAACAAATTTCACGGCTGTGTGCCGGGGAGTATTGGGAATATGACGAGGTTGAATGAGATTATTCTGATGAATAATGGGTTTCGGTCGTGTTTGCCGCCGGAGATTGGGTTGCTGAAGAATCTGACGGTGTTGGATTTGAGTTTTAATGAGTTTCTTGGGGCGTTGCCGGAGACGATCGGTGGAATGGTGAGTTTAGAGCAGCTGAATGTGGCGCATAATTTCTTGTCCGGGAAGGTTCCGGAGAGTATCTGTAAGTTGCCGAATCTGAAGAACTTTACCTATTCGTATAATTTCTTTACTGGAGAAGCGCCGTCGTGCTTGGCGTTGCCGGGCTTTGATGATCGGAGGAACTGTATTCCGAAGCGGCCGGTGCAGCGTTCGGAGAGGCAATCGCCGGTGTATTGTATCCGACCACCACCACCCCCGCCTCCACCAAACTCTCCCCCACCTCCACCAAATTCCCCACCTCCTCCTCCATTATTCTCTCCACCCCCACCTGTTTACTATTACAATTCACCGCCACCGCCCAACTCTCCACCACCACCACCAATGTACTCTCCACCACCACCACCAATGTACTCTCCTCCGCCACGGCCCCACTCACCACCTCCTCCACCGCATTCACCACCACCTCCAATCTATCCTTACCTATCTCCCCCACCTCCACCTGTCTATTCCCCTCCTCCACCTGTCTATTCCCCACCTCCACCCAATTCACCCCCACCACCACCGCCATGTATAGAGCTACCCCCACCACCACCGCCGCCATGTATAGAGTATCATGAACCCCCACCTCCACCATCACCATCACCACCGCCACCCATCCAATACCTTCCCCCACCATCTCCTTCCCCCCCACCACCACCGCCACCCACCCCAGTTTTCCATTCACCTCCCCCACCAATTTATTACTCTCCACCACCACCGTCACCGCCGCCGCCCTCATCCCCACCACCATCACCCGTATACGAAGGCCCATTGCCACCAATCTATGGAGTTTCGTACGCCTCTCCTCCACCTCCACCCTACTATTGA 1809 51.74 MKSDTHFTIHSLLQIFLFFGTLLCLASSEELLQVSGHGGGGGLTDAEAHYIRQRQLLYYRDEFGDRGEEVTVDPKLVFENDRLRNAYIALQAWKQAILSDPLNLTLNWVGSDVCSYKGVFCAEAPDNSSIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFKHLKMLFELDLSNNRFAGKFPRVVLELPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIILMNNGFRSCLPPEIGLLKNLTVLDLSFNEFLGALPETIGGMVSLEQLNVAHNFLSGKVPESICKLPNLKNFTYSYNFFTGEAPSCLALPGFDDRRNCIPKRPVQRSERQSPVYCIRPPPPPPPPNSPPPPPNSPPPPPLFSPPPPVYYYNSPPPPNSPPPPPMYSPPPPPMYSPPPRPHSPPPPPHSPPPPIYPYLSPPPPPVYSPPPPVYSPPPPNSPPPPPPCIELPPPPPPPCIEYHEPPPPPSPSPPPPIQYLPPPSPSPPPPPPPTPVFHSPPPPIYYSPPPPSPPPPSSPPPSPVYEGPLPPIYGVSYASPPPPPYY 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9122216 9124642 - Cp4.1LG07g09990.1 Cpe07g00999 472806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00999 602 MobiDBLite consensus disorder prediction 485 584 - -
Cpe07g00999 602 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 20 456 - -
Cpe07g00999 602 Gene3D Ribonuclease Inhibitor 248 376 IPR032675 -
Cpe07g00999 602 MobiDBLite consensus disorder prediction 379 416 - -
Cpe07g00999 602 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 20 456 - -
Cpe07g00999 602 Pfam Leucine rich repeat N-terminal domain 89 121 IPR013210 -
Cpe07g00999 602 SUPERFAMILY L domain-like 88 368 - -
Cpe07g00999 602 Gene3D Ribonuclease Inhibitor 87 247 IPR032675 -
Cpe07g00999 602 Pfam Leucine rich repeat 159 214 IPR001611 GO:0005515
Cpe07g00999 602 Pfam Leucine rich repeat 298 351 IPR001611 GO:0005515
Cpe07g00999 602 MobiDBLite consensus disorder prediction 437 469 - -
Cpe07g00999 602 MobiDBLite consensus disorder prediction 392 416 - -
Cpe07g00999 602 PRINTS Proline rich extensin signature 402 418 - -
Cpe07g00999 602 PRINTS Proline rich extensin signature 422 434 - -
Cpe07g00999 602 PRINTS Proline rich extensin signature 388 400 - -
Cpe07g00999 602 PRINTS Proline rich extensin signature 437 458 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00999 Cpe18g00446 CCT
Cpe07g00999 Cpe11g01106 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00999 Cpe-Chr7:9122216 Cpe17g00367 Cpe-Chr17:2640891 9.65E-119 dispersed
Cpe11g01147 Cpe-Chr11:9487580 Cpe07g00999 Cpe-Chr7:9122216 1.43E-92 dispersed
Cpe18g00390 Cpe-Chr18:5156070 Cpe07g00999 Cpe-Chr7:9122216 7.93E-103 dispersed
Cpe11g01106 Cpe-Chr11:9219685 Cpe07g00999 Cpe-Chr7:9122216 0 wgd
Cpe18g00446 Cpe-Chr18:5474595 Cpe07g00999 Cpe-Chr7:9122216 0 wgd
Cpe04g01144 Cpe-Chr4:9833112 Cpe07g00999 Cpe-Chr7:9122216 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00999 - - csv:101210261 719.924