Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g01018 ATGGGGGAAGAAGATTCCGCTGGTGTGCCTCCGAAGAAGGCTCAATCAGATGGTGCAGCGTTGAGTAATTCTTCGTCATCGGATATTCCGTCTAAGAAGCTCGCTAGGCAGCTCGATTTCACTGGCTATGGAGGCGCTCCGCATCCTCAATCTCATTCAAACTCGCATTCACAGTCGCAGACTCCATTAGTTTCTCAGAATCTTCAGCAAGCTCAGCCGAAGCCACAGCCGCAGATGGTGGCCGCGTCGATCGCACCTTTGGCGCCTCATTCGTCAGTTAGAACTGTGAAATCAGAATCCCCTATGTCAAGAGCAAGGCCTGCTGTTGAAGCTAAAGATAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCGCGGTGTCTAAAATTGTACTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGCTGCAACTGCTTAAATTGTTATAACAATGTTGAAAATGATGCTGCTAGAAGAGAAGCAGTCGAAGCTACATTAGAGCGTAATCCAAATGCGTTTCGACCAAAAATTGCTAGCAGTCCTCATGGAATGCGGGACAACCGAGAGGAGGCGGGGGAGCTGCTGATGTTGGGTAAGCACAACAAGGGATGCCACTGCAAGAAATCGGGTTGTCTCAAAAAATATTGCGAGTGTTTCCAGGCGAACATTCTCTGCTCGGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGACCATGGTAACAATATGGTATTCATTCAGCAGGCAGCTAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGTTATGCTTCACCTCCTGTTTCCAAAAAAAGGAAAGGTCAAGAACTCTACTTTGGATCGACGGCCAAGGAACTATCAACTCATAGACCAGTAGCATTTCAACAGGCAAATCATGTCAAAGCCACTGCTCCTCCGTTACCATCCTTCCCCATTGCTGGTGTCGGAAGTCCATCATTGTTGGGTCCCTCAAAGTTTACATATAGGTCTTTAATGGCAGACATCATTCAATCACAAAATTTGAAGGATCTTTGCTCTGTTTTGGTTGTGCTATCAAGTGAAGCTGCCAAAACATTTCAAGATCAAACAAATGCTACAGAAAAGCAAGCTGATTGTCAGATAGAAACTTCTGTTGCATCATCCAATCAAGATACGTCGCAGAAAAAAGATGTATCGAACGAGAAAGCTGCAGCCGATGATCGTTCAAGCGCAAACCAGACCAACAAAACCACCACTGATGATTCCAATTCAGATGGTGGTGATGTGCCAAAGGGCGCGACCATGTCTCCCGGAACATTGGCTTTGATGTGCGACGAGCAAGATACAATACTAATGGCTGCTGCTTCCCCCAACAGATTAATGGGTCCTGGCTGCAGCACATCTTCACAACTGCCCCACAGACAAGACATGTCAGAGGTCTATGCCGAGCAGGAGAGGATCGTCCTTACGAAGTTTCGGGATTGTCTCAATAGACTCATCACTTTAGGAGAAATAAAAGAGACACAGTGTTCCACTTTAGCCAGAAGTGAAGTAGGTAACCAAGAACACTCACTCAACCATGGCACTACAAATTCTAGAACCGAAACGCAAACTCATTTGGACCAACTCAACAATAAAGTTACGAAATCTTCGATCCCACCGTTGGGGAAGACCACGCAGACGGTAACCGCTGCAGTCATGACCCTTAGTAACGATCAGCGACAGAAAGTTTTGCCTCTGTCGTGA 1770 45.88 MGEEDSAGVPPKKAQSDGAALSNSSSSDIPSKKLARQLDFTGYGGAPHPQSHSNSHSQSQTPLVSQNLQQAQPKPQPQMVAASIAPLAPHSSVRTVKSESPMSRARPAVEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCLNCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDNREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMVFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGSTAKELSTHRPVAFQQANHVKATAPPLPSFPIAGVGSPSLLGPSKFTYRSLMADIIQSQNLKDLCSVLVVLSSEAAKTFQDQTNATEKQADCQIETSVASSNQDTSQKKDVSNEKAAADDRSSANQTNKTTTDDSNSDGGDVPKGATMSPGTLALMCDEQDTILMAAASPNRLMGPGCSTSSQLPHRQDMSEVYAEQERIVLTKFRDCLNRLITLGEIKETQCSTLARSEVGNQEHSLNHGTTNSRTETQTHLDQLNNKVTKSSIPPLGKTTQTVTAAVMTLSNDQRQKVLPLS 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9222387 9227801 - Cp4.1LG07g10150.1 Cpe07g01018 472825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g01018 589 MobiDBLite consensus disorder prediction 375 446 - -
Cpe07g01018 589 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 239 IPR005172 -
Cpe07g01018 589 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 119 154 IPR005172 -
Cpe07g01018 589 ProSiteProfiles CRC domain profile. 118 242 IPR005172 -
Cpe07g01018 589 MobiDBLite consensus disorder prediction 413 433 - -
Cpe07g01018 589 PANTHER TESMIN/TSO1-RELATED 55 577 IPR028307 -
Cpe07g01018 589 PANTHER TESMIN/TSO1-RELATED 26 78 IPR028307 -
Cpe07g01018 589 SMART CXC_2 202 243 IPR033467 -
Cpe07g01018 589 SMART CXC_2 117 157 IPR033467 -
Cpe07g01018 589 MobiDBLite consensus disorder prediction 47 77 - -
Cpe07g01018 589 MobiDBLite consensus disorder prediction 17 32 - -
Cpe07g01018 589 MobiDBLite consensus disorder prediction 375 402 - -
Cpe07g01018 589 MobiDBLite consensus disorder prediction 1 119 - -
Cpe07g01018 589 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 26 78 - -
Cpe07g01018 589 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 55 577 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g01018 Cpe18g00421 CCT
Cpe07g01018 Cpe18g00421 ECH
Cpe07g01018 Cpe11g01118 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g01018 Cpe-Chr7:9222387 Cpe12g00188 Cpe-Chr12:1201487 3.11E-34 dispersed
Cpe11g01118 Cpe-Chr11:9298119 Cpe07g01018 Cpe-Chr7:9222387 0 wgd
Cpe18g00421 Cpe-Chr18:5355816 Cpe07g01018 Cpe-Chr7:9222387 0 wgd
Cpe04g01122 Cpe-Chr4:9699835 Cpe07g01018 Cpe-Chr7:9222387 6.51E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49793 PF03638 TCR 3.10E-12 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g01018 - - csv:101211978 1021.92