Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g01027 ATGGCCAACGCCACCGTGCCGGAGACCGACTTAGGTGGCGTAAATTCTTCGCCGTCATCTTCGTCCTCCTCGTCTCGGCCCAAACAAGACGGTACCCAATTGAAGCGTGGGCGAGAAAATAACAACAACAGCAACAATAACAACAACAATCGACACCCAATTTACCGTGGCGTCCGAATGAGGGTGTGGGGCAAATGGGTGTCGGAAATTCGAGAACCAAAGAAGAAGAGTAGGATCTGGCTAGGCACTTTCGCGACGCCTGAAATGGCGGCGCGTGCTCACGACGTCGCCGCACTTACCATCAAAGGCAACTCGGCTATCCTCAATTTCCCTGAACTCGCCGCCTCATTCCCCCGCCCCGTTTCCTCCTCCCCCCGTGACGTTCAATTCGCAGCCGGCCTCGCCGCCTCAATGCAACTCCCCAACGTCGACCTTCCTCCACCCCCTCCGCCGTTATCTCCATCCTCTCAGTCGCCGTCGCCTCCGCTTTCATCGTCATCTGAGTTGGACGAGTCGACGCCGGAGGAACTGAGTGAAATCGTGAAGCTGCCGAGTTTGGGGACGAGTTACGAGGAATCGGGCGAGTTCGTGTGTGACGAGTGGCAGTATAGTTGTGGGCCATGGTATCAAAATCAAAGCAGAAGGGAAGAAGAAGAAGAAGAAGCTTACGAGTACTTTAGAGATCAAATGGCAATGGCGGAAACAGAGTGTGTGATTCCCGCTTCATTTCAACCTTTACCTTTCTCGTGGTAA 753 54.18 MANATVPETDLGGVNSSPSSSSSSSRPKQDGTQLKRGRENNNNSNNNNNNRHPIYRGVRMRVWGKWVSEIREPKKKSRIWLGTFATPEMAARAHDVAALTIKGNSAILNFPELAASFPRPVSSSPRDVQFAAGLAASMQLPNVDLPPPPPPLSPSSQSPSPPLSSSSELDESTPEELSEIVKLPSLGTSYEESGEFVCDEWQYSCGPWYQNQSRREEEEEEAYEYFRDQMAMAETECVIPASFQPLPFSW 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9274513 9275265 + Cp4.1LG07g10240.1 Cpe07g01027 472834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g01027 250 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 245 - -
Cpe07g01027 250 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 17 245 - -
Cpe07g01027 250 CDD AP2 53 113 IPR001471 GO:0003700|GO:0006355
Cpe07g01027 250 MobiDBLite consensus disorder prediction 140 177 - -
Cpe07g01027 250 MobiDBLite consensus disorder prediction 142 158 - -
Cpe07g01027 250 MobiDBLite consensus disorder prediction 1 53 - -
Cpe07g01027 250 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Cpe07g01027 250 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Cpe07g01027 250 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Cpe07g01027 250 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Cpe07g01027 250 SUPERFAMILY DNA-binding domain 54 112 IPR016177 GO:0003677
Cpe07g01027 250 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Cpe07g01027 250 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00511 Cpe-Chr2:3017728 Cpe07g01027 Cpe-Chr7:9274513 9.26E-51 dispersed
Cpe06g00494 Cpe-Chr6:2944013 Cpe07g01027 Cpe-Chr7:9274513 5.88E-52 dispersed
Cpe07g01027 Cpe-Chr7:9274513 Cpe08g01036 Cpe-Chr8:7953089 1.77E-30 dispersed
Cpe13g00177 Cpe-Chr13:1392367 Cpe07g01027 Cpe-Chr7:9274513 2.41E-25 dispersed
Cpe11g01128 Cpe-Chr11:9373423 Cpe07g01027 Cpe-Chr7:9274513 1.66E-17 wgd
Cpe18g00407 Cpe-Chr18:5268597 Cpe07g01027 Cpe-Chr7:9274513 1.49E-07 wgd
Cpe04g01105 Cpe-Chr4:9596314 Cpe07g01027 Cpe-Chr7:9274513 3.63E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49794 PF00847 AP2 4.40E-13 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g01027 K09286 - csv:101212945 299.671