Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe07g01069 | ATGATACAAAGAGCAGCCCAATCTTCAAAATCTCAACTGCAAGAACAACACTCTCCTTCTGCTTCTGAATCTCTTTGGGCGTTTGATTTTCATTTCTCGCTTTATAAGGGGCTCTGGATTCAAGCAAACATGGATGGAGGTGCGGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGAGACTTTAAGGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACCGATGTCGAAGAATTTTATCAGCAGTGCGACCCTGAGAAGGAAAACCTCTGCCTATATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCTGAAGAAGTACCTCCAGAGCTTCCGGAACCAGCTTTGGGTATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTGTCCCTTGTTGCCGTTCATAGTGACGCATGGCTTCTTGCTGTGGCTTTCTACTTTGGTGCTAGATTTGGCTTTGATAAATCTGACAGGAAACGACTTTTTACAATGATAAATGATATGCCCACAATCTTTGAGGTCGTGACGGGAGGTGTGAAGAAACAGGGAAAAGACAAGTCGTTAGTTTCAAATAACAGCAGCAACAAATCCAAGACAGGCTCAAAAGGGCGAGGATCTGAGGCAAGCAAATTGTCAAAGGGGTTAGCAAAAGAAGAGGATGAGGGACTACTAGACGAGGAAGAGGAGGAGGAGCACGGGGAGACCTTATGCGGGGCGTGCGGGGAAAACTATGCATCGGACGAGTTCTGGATATGTTGCGACCTATGTGAGAAGTGGTTCCATGGGAAGTGTGTGAAGATCACTCCTGCAAGAGCCGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGCGAGCACGGCCCTGA | 888 | 47.07 | MIQRAAQSSKSQLQEQHSPSASESLWAFDFHFSLYKGLWIQANMDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQQCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDMPTIFEVVTGGVKKQGKDKSLVSNNSSNKSKTGSKGRGSEASKLSKGLAKEEDEGLLDEEEEEEHGETLCGACGENYASDEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP | 295 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 9501216 | 9504959 | + | Cp4.1LG07g10730.1 | Cpe07g01069 | 472876 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe07g01069 | 295 | SMART | PHD_3 | 241 | 289 | IPR001965 | - | |
Cpe07g01069 | 295 | Pfam | Alfin | 54 | 182 | IPR021998 | GO:0006355|GO:0042393 | |
Cpe07g01069 | 295 | CDD | PHD_AL_plant | 241 | 291 | IPR044104 | - | |
Cpe07g01069 | 295 | Pfam | PHD-finger | 242 | 291 | IPR019787 | - | |
Cpe07g01069 | 295 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 232 | 290 | IPR013083 | - | |
Cpe07g01069 | 295 | PANTHER | CPG BINDING PROTEIN | 46 | 295 | IPR045104 | GO:0006355|GO:0042393 | |
Cpe07g01069 | 295 | MobiDBLite | consensus disorder prediction | 188 | 235 | - | - | |
Cpe07g01069 | 295 | ProSitePatterns | Zinc finger PHD-type signature. | 242 | 288 | IPR019786 | - | |
Cpe07g01069 | 295 | ProSiteProfiles | Zinc finger PHD-type profile. | 239 | 291 | IPR019787 | - | |
Cpe07g01069 | 295 | MobiDBLite | consensus disorder prediction | 190 | 211 | - | - | |
Cpe07g01069 | 295 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 46 | 295 | - | - | |
Cpe07g01069 | 295 | SUPERFAMILY | FYVE/PHD zinc finger | 231 | 292 | IPR011011 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe07g01069 | Cpe-Chr7:9501216 | Cpe17g00469 | Cpe-Chr17:3498302 | 2.97E-129 | dispersed | |
Cpe07g00574 | Cpe-Chr7:3810000 | Cpe07g01069 | Cpe-Chr7:9501216 | 3.15E-141 | transposed | |
Cpe11g00358 | Cpe-Chr11:1957860 | Cpe07g01069 | Cpe-Chr7:9501216 | 2.50E-141 | transposed | |
Cpe11g01191 | Cpe-Chr11:9739053 | Cpe07g01069 | Cpe-Chr7:9501216 | 1.15E-151 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49799 | PF12165 | Alfin | 4.20E-70 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe07g01069 | - | - | jre:109009410 | 455.677 |