Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g01069 ATGATACAAAGAGCAGCCCAATCTTCAAAATCTCAACTGCAAGAACAACACTCTCCTTCTGCTTCTGAATCTCTTTGGGCGTTTGATTTTCATTTCTCGCTTTATAAGGGGCTCTGGATTCAAGCAAACATGGATGGAGGTGCGGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGAGACTTTAAGGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACCGATGTCGAAGAATTTTATCAGCAGTGCGACCCTGAGAAGGAAAACCTCTGCCTATATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCTGAAGAAGTACCTCCAGAGCTTCCGGAACCAGCTTTGGGTATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTGTCCCTTGTTGCCGTTCATAGTGACGCATGGCTTCTTGCTGTGGCTTTCTACTTTGGTGCTAGATTTGGCTTTGATAAATCTGACAGGAAACGACTTTTTACAATGATAAATGATATGCCCACAATCTTTGAGGTCGTGACGGGAGGTGTGAAGAAACAGGGAAAAGACAAGTCGTTAGTTTCAAATAACAGCAGCAACAAATCCAAGACAGGCTCAAAAGGGCGAGGATCTGAGGCAAGCAAATTGTCAAAGGGGTTAGCAAAAGAAGAGGATGAGGGACTACTAGACGAGGAAGAGGAGGAGGAGCACGGGGAGACCTTATGCGGGGCGTGCGGGGAAAACTATGCATCGGACGAGTTCTGGATATGTTGCGACCTATGTGAGAAGTGGTTCCATGGGAAGTGTGTGAAGATCACTCCTGCAAGAGCCGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGCGAGCACGGCCCTGA 888 47.07 MIQRAAQSSKSQLQEQHSPSASESLWAFDFHFSLYKGLWIQANMDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQQCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDMPTIFEVVTGGVKKQGKDKSLVSNNSSNKSKTGSKGRGSEASKLSKGLAKEEDEGLLDEEEEEEHGETLCGACGENYASDEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9501216 9504959 + Cp4.1LG07g10730.1 Cpe07g01069 472876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g01069 295 SMART PHD_3 241 289 IPR001965 -
Cpe07g01069 295 Pfam Alfin 54 182 IPR021998 GO:0006355|GO:0042393
Cpe07g01069 295 CDD PHD_AL_plant 241 291 IPR044104 -
Cpe07g01069 295 Pfam PHD-finger 242 291 IPR019787 -
Cpe07g01069 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 290 IPR013083 -
Cpe07g01069 295 PANTHER CPG BINDING PROTEIN 46 295 IPR045104 GO:0006355|GO:0042393
Cpe07g01069 295 MobiDBLite consensus disorder prediction 188 235 - -
Cpe07g01069 295 ProSitePatterns Zinc finger PHD-type signature. 242 288 IPR019786 -
Cpe07g01069 295 ProSiteProfiles Zinc finger PHD-type profile. 239 291 IPR019787 -
Cpe07g01069 295 MobiDBLite consensus disorder prediction 190 211 - -
Cpe07g01069 295 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 46 295 - -
Cpe07g01069 295 SUPERFAMILY FYVE/PHD zinc finger 231 292 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g01069 Cpe-Chr7:9501216 Cpe17g00469 Cpe-Chr17:3498302 2.97E-129 dispersed
Cpe07g00574 Cpe-Chr7:3810000 Cpe07g01069 Cpe-Chr7:9501216 3.15E-141 transposed
Cpe11g00358 Cpe-Chr11:1957860 Cpe07g01069 Cpe-Chr7:9501216 2.50E-141 transposed
Cpe11g01191 Cpe-Chr11:9739053 Cpe07g01069 Cpe-Chr7:9501216 1.15E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49799 PF12165 Alfin 4.20E-70 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g01069 - - jre:109009410 455.677