Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g01105 ATGAACTCAATCATGTCAAGCTGCATCAACAGTGCACAGGAGCAACTCTGCTATATTCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAATCTCTTAGACATAGTGACAGTCCGATGTGGTCACTGCAGCAACCTCTGGTCGGTGAACATGGCCGCCGCTTTCCAATCTCTCTCGTGGAAAAATTCTCAGGCATCAAGCCACAGCCACAATGGAAATGCAGCTGATTACAGGGTAGAATTGGGCTCATCATCAAAATGCAACAACAAAATGAAGACGAGAGCACCAATTCAAAACACTACAAATGATGATCAAAGAGTAATCAACAGACCTCCCGAGAAGAAGCAGAGAGTACCTTCTGCATACAATAAGTTCATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTACCCACACATTCAATGCCTCATGCTGGAAGCCAACAATCTCAAGACTCAGAATGATGGATCTGAGAAGCATTATATGTCAGTGCCAGGGCTGCACTATTGA 582 43.64 MNSIMSSCINSAQEQLCYIPCNFCNIVLAVSVPCSNLLDIVTVRCGHCSNLWSVNMAAAFQSLSWKNSQASSHSHNGNAADYRVELGSSSKCNNKMKTRAPIQNTTNDDQRVINRPPEKKQRVPSAYNKFIKEEIQRIKANNPDITHREAFSTAAKNWAHYPHIQCLMLEANNLKTQNDGSEKHYMSVPGLHY 193
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 9727251 9734543 - Cp4.1LG07g11420.1 Cpe07g01105 472912
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g01105 193 Pfam YABBY protein 12 166 IPR006780 GO:0007275
Cpe07g01105 193 Gene3D High mobility group box domain 113 173 IPR036910 -
Cpe07g01105 193 PANTHER PROTEIN YABBY 6-RELATED 5 184 IPR006780 GO:0007275
Cpe07g01105 193 SUPERFAMILY HMG-box 109 162 IPR036910 -
Cpe07g01105 193 PANTHER AXIAL REGULATOR YABBY 5 5 184 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g01105 Cpe-Chr7:9727251 Cpe08g00754 Cpe-Chr8:6069752 1.40E-44 dispersed
Cpe11g01064 Cpe-Chr11:8932872 Cpe07g01105 Cpe-Chr7:9727251 3.40E-122 wgd
Cpe18g00498 Cpe-Chr18:5778295 Cpe07g01105 Cpe-Chr7:9727251 2.21E-75 wgd
Cpe04g01191 Cpe-Chr4:10087072 Cpe07g01105 Cpe-Chr7:9727251 1.99E-69 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49801 PF04690 YABBY 5.70E-67 CL0114 Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g01105 K25796 - csv:101219877 333.954