Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe07g01105 | ATGAACTCAATCATGTCAAGCTGCATCAACAGTGCACAGGAGCAACTCTGCTATATTCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAATCTCTTAGACATAGTGACAGTCCGATGTGGTCACTGCAGCAACCTCTGGTCGGTGAACATGGCCGCCGCTTTCCAATCTCTCTCGTGGAAAAATTCTCAGGCATCAAGCCACAGCCACAATGGAAATGCAGCTGATTACAGGGTAGAATTGGGCTCATCATCAAAATGCAACAACAAAATGAAGACGAGAGCACCAATTCAAAACACTACAAATGATGATCAAAGAGTAATCAACAGACCTCCCGAGAAGAAGCAGAGAGTACCTTCTGCATACAATAAGTTCATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTACCCACACATTCAATGCCTCATGCTGGAAGCCAACAATCTCAAGACTCAGAATGATGGATCTGAGAAGCATTATATGTCAGTGCCAGGGCTGCACTATTGA | 582 | 43.64 | MNSIMSSCINSAQEQLCYIPCNFCNIVLAVSVPCSNLLDIVTVRCGHCSNLWSVNMAAAFQSLSWKNSQASSHSHNGNAADYRVELGSSSKCNNKMKTRAPIQNTTNDDQRVINRPPEKKQRVPSAYNKFIKEEIQRIKANNPDITHREAFSTAAKNWAHYPHIQCLMLEANNLKTQNDGSEKHYMSVPGLHY | 193 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 9727251 | 9734543 | - | Cp4.1LG07g11420.1 | Cpe07g01105 | 472912 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe07g01105 | 193 | Pfam | YABBY protein | 12 | 166 | IPR006780 | GO:0007275 | |
| Cpe07g01105 | 193 | Gene3D | High mobility group box domain | 113 | 173 | IPR036910 | - | |
| Cpe07g01105 | 193 | PANTHER | PROTEIN YABBY 6-RELATED | 5 | 184 | IPR006780 | GO:0007275 | |
| Cpe07g01105 | 193 | SUPERFAMILY | HMG-box | 109 | 162 | IPR036910 | - | |
| Cpe07g01105 | 193 | PANTHER | AXIAL REGULATOR YABBY 5 | 5 | 184 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe07g01105 | Cpe-Chr7:9727251 | Cpe08g00754 | Cpe-Chr8:6069752 | 1.40E-44 | dispersed | |
| Cpe11g01064 | Cpe-Chr11:8932872 | Cpe07g01105 | Cpe-Chr7:9727251 | 3.40E-122 | wgd | |
| Cpe18g00498 | Cpe-Chr18:5778295 | Cpe07g01105 | Cpe-Chr7:9727251 | 2.21E-75 | wgd | |
| Cpe04g01191 | Cpe-Chr4:10087072 | Cpe07g01105 | Cpe-Chr7:9727251 | 1.99E-69 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49801 | PF04690 | YABBY | 5.70E-67 | CL0114 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe07g01105 | K25796 | - | csv:101219877 | 333.954 |