Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cpe07g01135	ATGTCGGGTTGGGATGAAGGAGGAATCTACTACAGCGATCAAGCGCAGTCCCTCGGCGACGGAACTGGCTTCGGCCGCAGCGGAGTTGTCGACGAGAAGGCCACTCATCACTCGGTCCTTCGCAAATTCAAGGAGTTCATCCGTGGATTTGAAGTGGAAAAGAATGTTTTCCCCTACAGAGAGAGCCTTCTCCACAACCCCAAATTTCTTCGCGTTGATATGGAGGACGTTCATGCTTTCGACTCCGATCTTCCGGCCAAGCTTCGATCTGCTCCTGCCGATTTCTTGCCATTGTTTGAGACTGCTGCGGCGGAGGTTTTAATGAATCTGAAGACGAAGGTGGCTGGTGAAACTGGAGAAATGGTGGAGCCCGTGCCTGGGGATGTTCAAATTCTGCTAACGTCAAAGGAGGATCCGGTCTCGATGCGGTCACTTGGGGCTCAATACATTTCAAAACTTATTAAAATATCTGGAATCACTATAGCTGCGTCAAGGACCAAGGCAAAGGCTACTTATGTGACCTTATTGTGCAAAAACTGCAGAAGTACACTAAGAGTTCCGTGTCGGCCAGGACTTGGAGGGGCAATTGTCCCTCGATCATGTAACCATATGCCCCAGGCCGGAGAAGAACCATGCCCTCTAGATCCTTGGATTGTGGTTCCTGATAAGAGCATGTATGTTGATCAACAGACTTTAAAACTTCAGGAAAACCCAGAAGATGTCCCAACTGGGGAACTTCCTAGGAACATGCTTCTATCAGTAGATCGACATCTTGTTCAAACAATTGTTCCAGGCACTAGATTGACCATCATGGGGATATATAGTATCTTTCAAGCTGCCAATTCTGCCGCATCCCACAAAGGAGCAGTTGCTATCAGGCAGCCTTATATCAGGGTTGTAGGCATTGAAGAAACTAATGAAGCTAACTCTCGTGGCCCTGCATCTTTCACAACAGAAGATATAGAAGAGTTCAAAAAATTTGCAGCCGAGCCTGATGTCTATAAAGCCATTTGTTCAAAGATTGCCCCCTCTATATTTGGTCATGAAGATGTGAAGAAGGCAGTGGCTTGCCTTCTATTTGGAGGATCTAGGAAGAATTTGCCTGATGGGGTTAAGTTAAGAGGCGACATTAATGTATTACTCTTGGGGGACCCATCTACAGCTAAATCCCAGTTTCTCAAGTTTGTTGAGAAGACAGCTCCAGTTGCTGTTTATACTTCTGGAAAAGGTTCATCGGCTGCTGGTCTTACAGCTTCAGTGATACGGGACAGCAGCTCTCGAGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGCTGATGGAGGTGTTGTCTGCATTGATGAGTTTGACAAAATGAGATCAGAGGATAGAGTTGCTATTCATGAAGCCATGGAACAACAGACAATATCCATTGCCAAAGCAGGAATAACAACGGTTCTTAATTCCAGAACCTCAGTGCTTGCAGCTGCTAATCCTCCGTCAGGACGTTATGATGATCTTAAGACGGCACAGGATAACATTGATTTGCAAACGACAATTCTCTCCAGATTTGATTTAATTTTCATCGTGAAAGATATAAGGATGTACAGTCAAGATAAGATCATAGCAAGCCACATTATAAAAGTTCATGCATCTGCTGATGCCAACTTGGGTGAACATAGAACTTCTAAAGAAGAGAATTGGCTAAAGAGGTATCTTCAATATTGCCGATCTCATTGTCATCCCCGTTTGTCAGAATCCGCGTCCACAATGCTGCAGAATAATTATGTTAAAATCAGACAGGACATGAGACAACAAGCAAATGAAACAGGTGAGGCTGCTGCAATTCCGATCACAGTTAGGCAGCTGGAAGCTATAGTCAGATTAAGCGAGGCACTTGCGAAAATGAAGTTGTCCCATGTTGCCACTGAAGAAAATGTGCAGGAAGCTATTAGACTTTTTACTGTGTCCACGATGGATGCAGCACGCTCTGGGATTCATCAGCAAGTAAATCTAACTCCTGAAATGGCTAATGAAATAAAGCAAGCAGAAACACAGATAAAGAGAAGAATAGGAATTGGCAACCACATATCTGAGAGAAGACTGATTGATGAGCTCACCAAAATGGGGATGAACGAGTCAATTGTGAGAAGAGCCCTGATTATTATGCACCAGAGAGATGAAGTTGAATATAAAAGAGAGAGGCGTCTCATTTTCCGCAAGGCATGA	2208	44.47	MSGWDEGGIYYSDQAQSLGDGTGFGRSGVVDEKATHHSVLRKFKEFIRGFEVEKNVFPYRESLLHNPKFLRVDMEDVHAFDSDLPAKLRSAPADFLPLFETAAAEVLMNLKTKVAGETGEMVEPVPGDVQILLTSKEDPVSMRSLGAQYISKLIKISGITIAASRTKAKATYVTLLCKNCRSTLRVPCRPGLGGAIVPRSCNHMPQAGEEPCPLDPWIVVPDKSMYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIFQAANSAASHKGAVAIRQPYIRVVGIEETNEANSRGPASFTTEDIEEFKKFAAEPDVYKAICSKIAPSIFGHEDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIRDSSSREFYLEGGAMVLADGGVVCIDEFDKMRSEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKVHASADANLGEHRTSKEENWLKRYLQYCRSHCHPRLSESASTMLQNNYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHVATEENVQEAIRLFTVSTMDAARSGIHQQVNLTPEMANEIKQAETQIKRRIGIGNHISERRLIDELTKMGMNESIVRRALIIMHQRDEVEYKRERRLIFRKA	735

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
7	9957061	9962931	-	Cp4.1LG07g11100.1	Cpe07g01135	472942

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cpe07g01135	735	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	374	389	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cpe07g01135	735	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	434	448	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cpe07g01135	735	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	462	475	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cpe07g01135	735	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	486	498	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cpe07g01135	735	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	513	521	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cpe07g01135	735	SMART	mcm	138	652	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
Cpe07g01135	735	Gene3D	-	30	122	-	-
Cpe07g01135	735	CDD	MCM5	337	650	-	-
Cpe07g01135	735	SUPERFAMILY	Nucleic acid-binding proteins	42	299	IPR012340	-
Cpe07g01135	735	Gene3D	-	142	277	IPR012340	-
Cpe07g01135	735	ProSiteProfiles	MCM family domain profile.	333	539	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cpe07g01135	735	ProSitePatterns	MCM family signature.	442	450	IPR018525	GO:0003677\|GO:0005524\|GO:0006260
Cpe07g01135	735	Gene3D	-	169	227	-	-
Cpe07g01135	735	Pfam	MCM OB domain	142	277	IPR033762	-
Cpe07g01135	735	Pfam	MCM AAA-lid domain	561	650	IPR041562	-
Cpe07g01135	735	Gene3D	-	314	670	IPR027417	-
Cpe07g01135	735	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	63	681	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
Cpe07g01135	735	PANTHER	DNA REPLICATION LICENSING FACTOR MCM5	63	681	-	-
Cpe07g01135	735	Pfam	MCM P-loop domain	320	543	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cpe07g01135	735	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	343	651	IPR027417	-
Cpe07g01135	735	PRINTS	Mini-chromosome maintenance (MCM) protein 5 signature	143	158	IPR008048	GO:0003688\|GO:0005524\|GO:0005634\|GO:0006270\|GO:0042555
Cpe07g01135	735	PRINTS	Mini-chromosome maintenance (MCM) protein 5 signature	169	181	IPR008048	GO:0003688\|GO:0005524\|GO:0005634\|GO:0006270\|GO:0042555
Cpe07g01135	735	PRINTS	Mini-chromosome maintenance (MCM) protein 5 signature	293	305	IPR008048	GO:0003688\|GO:0005524\|GO:0005634\|GO:0006270\|GO:0042555
Cpe07g01135	735	PRINTS	Mini-chromosome maintenance (MCM) protein 5 signature	569	584	IPR008048	GO:0003688\|GO:0005524\|GO:0005634\|GO:0006270\|GO:0042555
Cpe07g01135	735	PRINTS	Mini-chromosome maintenance (MCM) protein 5 signature	645	662	IPR008048	GO:0003688\|GO:0005524\|GO:0005634\|GO:0006270\|GO:0042555
Cpe07g01135	735	Pfam	MCM N-terminal domain	41	112	IPR027925	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cpe07g01135	K02209	MCM5, CDC46; DNA replication licensing factor MCM5 [EC:5.6.2.3]	-	csv:101211822	1382.47

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cpe07g01135	Cpe-Chr7:9957061	Cpe08g00006	Cpe-Chr8:55997	6.40E-104	dispersed
	Cpe07g01135	Cpe-Chr7:9957061	Cpe15g00556	Cpe-Chr15:6397771	7.24E-107	transposed

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi11g613	.	.	.	.	Bpe01g00814	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Cla11g00330	.	.	.	.	.	.	Cone2ag0557	Cone16ag0446	.	.	.	Csa02g00251	Chy05g01255	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Cpe07g01135	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Cpe06g01023	.	106	786	Core DNA Replication Machinery Family	AT4G14700	65.0	4.4e-259	891.3
Cpe06g01023	.	73	786	Core DNA Replication Machinery Family	AT4G12620	65.7	1.7e-271	932.6
Cpe07g00469	.	1	276	Core DNA Replication Machinery Family	AT2G37560	68.1	2.7e-109	392.5
Cpe01g01014	.	9	410	Core DNA Replication Machinery Family	AT2G01120	65.8	3.4e-154	542.0
Cpe12g00375	.	3	536	Core DNA Replication Machinery Family	AT4G29910	56.9	1.6e-167	586.6
Cpe11g00701	.	1	226	Core DNA Replication Machinery Family	AT1G26840	73.0	1.5e-89	326.6
Cpe08g00047	.	962	1793	Core DNA Replication Machinery Family	AT1G79150	58.4	2.9e-242	835.5
Cpe15g00894	.	1	368	Core DNA Replication Machinery Family	AT1G79150	52.6	2.1e-102	370.9
Cpe03g00916	.	9	939	Core DNA Replication Machinery Family	AT1G44900	75.2	0.0e+00	1335.9
Cpe08g00006	.	1	966	Core DNA Replication Machinery Family	AT1G44900	73.4	0.0e+00	1331.6
Cpe19g01129	CCT	65	636	Core DNA Replication Machinery Family	AT5G46280	81.5	2.1e-268	921.8
Cpe04g00111	CST	1	845	Core DNA Replication Machinery Family	AT2G16440	74.9	0.0e+00	1179.5
Cpe15g00556	CST	1	845	Core DNA Replication Machinery Family	AT2G16440	76.9	0.0e+00	1159.4
Cpe07g01135	.	1	735	Core DNA Replication Machinery Family	AT2G07690	78.4	0.0e+00	1114.0
Cpe19g01218	.	7	818	Core DNA Replication Machinery Family	AT5G44635	71.6	0.0e+00	1170.6
Cpe17g00747	.	11	722	Core DNA Replication Machinery Family	AT4G02060	85.7	0.0e+00	1218.0
Cpe12g00890	.	8	678	Core DNA Replication Machinery Family	AT4G02060	81.3	0.0e+00	1137.9
Cpe16g00653	.	30	518	Core DNA Replication Machinery Family	AT2G29680	60.4	1.4e-162	570.1
Cpe16g00653	.	30	479	Core DNA Replication Machinery Family	AT1G07270	58.1	2.0e-142	503.1
Cpe12g01089	.	1	593	Core DNA Replication Machinery Family	AT3G25100	76.6	5.2e-257	884.0
Cpe08g01122	.	37	715	Core DNA Replication Machinery Family	AT3G09660	67.0	2.4e-278	955.3
Cpe15g00364	.	16	642	Core DNA Replication Machinery Family	AT2G14050	78.4	2.3e-287	984.9
Cpe16g00316	.	1	437	Core DNA Replication Machinery Family	AT2G20980	51.3	2.6e-111	399.4
Cpe06g00607	CCT	7	893	Core DNA Replication Machinery Family	AT1G77320	50.1	5.9e-237	818.1
Cpe17g00581	.	1	200	Core DNA Replication Machinery Family	AT1G80190	66.8	7.5e-75	277.3
Cpe19g00178	.	1	145	Core DNA Replication Machinery Family	AT3G12530	73.1	1.2e-61	233.0
Cpe01g02514	.	8	177	Core DNA Replication Machinery Family	AT1G19080	64.1	1.7e-57	219.5
Cpe01g02514	.	8	177	Core DNA Replication Machinery Family	AT3G55490	64.1	1.7e-57	219.5
Cpe03g01740	.	15	164	Core DNA Replication Machinery Family	AT5G49010	66.7	5.0e-52	201.4
Cpe05g01165	.	1	1529	Core DNA Replication Machinery Family	AT5G67100	59.5	0.0e+00	1731.1
Cpe09g00571	.	2	625	Core DNA Replication Machinery Family	AT1G67630	63.5	1.3e-223	773.1
Cpe17g01067	.	1	359	Core DNA Replication Machinery Family	AT1G67320	53.3	1.8e-130	463.4
Cpe06g00974	.	1	483	Core DNA Replication Machinery Family	AT5G41880	60.2	1.7e-172	602.8
Cpe19g00507	.	47	1084	Core DNA Replication Machinery Family	AT5G63960	80.4	0.0e+00	1696.4
Cpe03g00370	.	15	431	Core DNA Replication Machinery Family	AT2G42120	73.1	3.6e-191	664.8
Cpe17g01067	.	1	359	Core DNA Replication Machinery Family	AT1G67320	53.3	1.8e-130	463.4
Cpe05g00419	.	1	2115	Core DNA Replication Machinery Family	AT1G08260	70.1	0.0e+00	2947.9
Cpe05g00419	.	9	2221	Core DNA Replication Machinery Family	AT2G27120	67.0	0.0e+00	2918.3
Cpe02g01094	.	7	502	Core DNA Replication Machinery Family	AT5G22110	69.0	2.1e-195	679.1
Cpe05g00456	.	1	929	Core DNA Replication Machinery Family	AT5G22010	62.6	3.9e-304	1041.2
Cpe14g00835	.	1	333	Core DNA Replication Machinery Family	AT1G63160	89.5	3.8e-172	601.3
Cpe10g01069	.	11	275	Core DNA Replication Machinery Family	AT5G27740	65.4	7.0e-92	334.7
Cpe02g00567	.	3	323	Core DNA Replication Machinery Family	AT1G21690	80.7	3.3e-144	508.4
Cpe01g02062	.	1	363	Core DNA Replication Machinery Family	AT1G77470	73.9	2.6e-150	528.9
Cpe13g00630	.	1	455	Core DNA Replication Machinery Family	AT1G77470	62.9	2.3e-146	515.8
Cpe11g01184	.	34	626	Core DNA Replication Machinery Family	AT2G06510	69.0	2.3e-252	868.6
Cpe11g01188	.	26	618	Core DNA Replication Machinery Family	AT2G06510	69.0	2.3e-252	868.6
Cpe08g00899	.	30	697	Core DNA Replication Machinery Family	AT2G06510	52.1	1.1e-201	700.3
Cpe14g01003	.	34	685	Core DNA Replication Machinery Family	AT2G06510	52.6	1.0e-199	693.7
Cpe04g01458	.	1	622	Core DNA Replication Machinery Family	AT5G08020	67.9	3.5e-245	844.7
Cpe08g00899	.	6	804	Core DNA Replication Machinery Family	AT5G45400	51.7	7.0e-231	797.7
Cpe14g01003	.	10	784	Core DNA Replication Machinery Family	AT5G45400	51.6	4.8e-224	775.0
Cpe04g01458	.	1	617	Core DNA Replication Machinery Family	AT5G61000	65.6	6.7e-239	823.9
Cpe08g00899	.	1	818	Core DNA Replication Machinery Family	AT4G19130	53.3	4.9e-231	798.1
Cpe14g01003	.	5	771	Core DNA Replication Machinery Family	AT4G19130	54.8	8.7e-228	787.3
Cpe02g00418	.	1	252	Core DNA Replication Machinery Family	AT2G24490	50.2	4.2e-68	255.4
Cpe04g00203	.	1	402	Core DNA Replication Machinery Family	AT5G26680	80.7	5.5e-181	630.9
Cpe03g01241	.	1	297	Core DNA Replication Machinery Family	AT2G25100	66.7	1.0e-114	410.2
Cpe16g00505	.	44	785	Core DNA Replication Machinery Family	AT1G08130	66.3	5.4e-278	954.1
Cpe16g00505	.	204	785	Core DNA Replication Machinery Family	AT1G49250	66.6	3.6e-227	785.0

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0011422	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	2	1	1	1	1	1	1	31

Transcriptome

Select	Gene	Chr	Type	da1	da2	da3	da4	da5	da6	da7	da8	da9	da10
	Cpe07g01135	Cpe_Chr07	FPKM	8.063653	9.441554	0.0	0.0	0.888027	0.578037	0.738613	0.0	0.0	0.0