Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00006 ATGGCTGGAGAAACTCCCGATGGAAACTCCGGCAATCTGCCGTCGGAGCTCGATTCCCCCACCACCTCCGCTGGTTTCGAAACAGACCAGCTCCCTCATCTCAGCCACATTTCCGACAACTACCCCGACGAGGACGAAGCCGCCGTTGATCCTCGCATCGTTCACGACGAGCCTGATCCCGATGAAGAAGAGGAAGGAGAGGATCTCTACCACGACAATTTCCTGGACGATTATCGGAGGATGGACGACCATGACCAGTACGAGTCCTTGGGCCTCGACGATTCTTTAGAGGACGAGAGGGATTTGGATCAGATTATGGAGGACAGACGAGCTGCTGAGATGGAACTCGAGACTCGTGATGCTCAGTTCACCCGTCGGAAGCTTCCTGAGCTATTACACGACCATGACTCTGAGAATGACAATTACAGGCCTTCGAAAAGATCAAGAGCCGATTTTCGTCCTCCAGCTGCAGCAAGAAGCTACGATGACATTGATGGCATGCAAAGTTCTCCAGGTAGATCACAAAGGGAAAACTCACGAGATGATGTGCCCATGACTGATCATTCTGTTGATGACCAATATGAGGTGTATAAGGCTGTCACATCTTTGTTTTCCAAGATGAAGATGATGATGAAAATGAGTGAGATGTATCGTGTTCAAGGGCCACTTAGAGAGCATGTTACTATGGATGCAGTTCGGCGCTTTATAGGCAAAAAGTTTAAGAAATTCTTGGAAACATATGTGAATCCTAAGAGTGGAAATGGAGAGCTCGAGTACATGCGACTGATAAATGAGATGGTTTTAGCCAATAGGTGCAGTTTGGAGATTGATTACAAGCAGTTTATCTTTGTTCATCCAAATATTGCAATCTGGTTGGCTGATGCACCCCAATCCGTCTTAGAAGTTATGGAAGATGTTGCAAAGAAGGTTGTGTTTGACATACATCCGAACTACAAAAACATCCACCAAAAGATCTATGTTCGCATCAATAATTTACCAGTTTATGATCAGATTCGAAATATTAGGCAAATTCATTTAAATACCATGATTCGCATTGGTGGCGTAGTGACTCGGCGCTCTGGTGTGTTTCCCCAGTTGCAGCAGGTGAAGTATGATTGTAATAAATGTGGAACAATATTGGGACCATTTTTTCAGAATTCTTACTCAGAGGTCAAGGTTGGTTCTTGTCCTGAATGCCAGTCGAAGGGGCCATTTACAGTAAATGTCGAGCAGACTATATATAGGAACTACCAAAAGCTAACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCTGGTCGACTCCCAAGGTATAAGGAAGTGATACTCTTGAATGATCTAATTGATTGTGCCCGTCCTGGGGAGGAAATTGAAGTCACTGGCATTTATACAAATAATTTTGACTTATCGTTGAATACAAAGAATGGTTTTCCTGTGTTCTCCACGGTTGTTGAAGCAAATTATGTTACCAAGAAGCAAGATCTCTTCTCTGCTTACAAGCTTACCCAGGAAGACAAAGAAGAGATTGAGAAGTTGGCTAAAGACCCTAGAATTGGAGAAAGGATAATCAAATCCATTGCCCCATCAATCTATGGTCACGAGGACATAAAAACAGCAATTGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGGAAACACCGGTTACGAGGTGATATCAATGTACTTTTACTAGGTGATCCTGGCACTGCCAAATCTCAATTTCTCAAGTATGTTGAGAAAACTGGGCATAGAGCAGTGTACACCACAGGGAAAGGAGCTTCAGCTGTAGGACTAACAGCAGCAGTGCACAAGGATCCTGTCACAAGGGAGTGGACCCTTGAAGGTGGTGCCCTTGTATTAGCCGATAGAGGAATTTGTCTGATTGATGAGTTTGACAAAATGAATGATCAGGACAGGGTGAGTATACATGAAGCAATGGAGCAGCAAAGCATCAGCATATCAAAAGCTGGAATTGTCACTTCTCTTCAAGCCAGATGCTCTGTCATTGCAGCTGCCAATCCCGTTGGAGGAAGGTACGACTCCTCAAAAACATTTTCACAAAATGTGGAGCTGACAGATCCTATCATTTCTCGATTTGACATCCTCTGCGTTGTTAAGGATGTGGTAGACTCTGTAACAGATGAGATGCTTGCTAAGTTTGTTGTTGATAGTCATTTCAAATCACAGCCGAAGGGCGGTAATATTGATGATAAGTCTGTAAATGAATCTCAAGAGGACAGTCAAGACTCTACAAGGCCACTGGATCCGGAGGTGCTTCCCCAAGATCTGCTGAAGAAGTACATAACTTATGCTAAGTTGAATGTTTTTCCAAGGTTGCATGATGCTGATATGGATAAGTTAACACATGTCTACGCAGAATTACGAAGGGAATCTTCTTTAAGGCTCTATTTTACACCTCTTTCTTTTTATTATTATTGGTTTTTTATGCATGGGCAAGGAGTTCCTATTGCAGTTAGGCACATAGAGTCAATGATACGCATGTCTGAAGCACATGCAAGAATGCACCTTAGGCAGCACGTCACACAAGAAGATGTTGATATGGCAATTCGTGTGTTACTTGATTCTTTCATTTCGACCCAAAAATTTGGGGTACAGAAAGCTCTGCAAAAGAGCTTTAGAAAGTATATGACTTTCAAGAAGGATTACAACGAACTGCTCCTATATCTTCTTCGAGAGCTTGTGAAGAATGCACTTCACTTTGAGGAAATTGTTCGTGGATCTACATCGGAGCTTATCCACATCAATGTGAAATTGGAAGACCTACAAAGCAAGGCACAGGAGCATGAAATTTATGATTTGAAACCCTTCTTCACCAGCTCCCACTTTTCAAATGCTAATTTTGTGCTGGATGAAGAGCGTGGAGTAATCAAGCATCACCTTGCCAGATGA 2916 43.11 MAGETPDGNSGNLPSELDSPTTSAGFETDQLPHLSHISDNYPDEDEAAVDPRIVHDEPDPDEEEEGEDLYHDNFLDDYRRMDDHDQYESLGLDDSLEDERDLDQIMEDRRAAEMELETRDAQFTRRKLPELLHDHDSENDNYRPSKRSRADFRPPAAARSYDDIDGMQSSPGRSQRENSRDDVPMTDHSVDDQYEVYKAVTSLFSKMKMMMKMSEMYRVQGPLREHVTMDAVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQSVLEVMEDVAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDSVTDEMLAKFVVDSHFKSQPKGGNIDDKSVNESQEDSQDSTRPLDPEVLPQDLLKKYITYAKLNVFPRLHDADMDKLTHVYAELRRESSLRLYFTPLSFYYYWFFMHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTSELIHINVKLEDLQSKAQEHEIYDLKPFFTSSHFSNANFVLDEERGVIKHHLAR 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 55997 61808 + Cp4.1LG08g06740.1 Cpe08g00006 472972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00006 971 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 481 492 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cpe08g00006 971 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 466 477 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cpe08g00006 971 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 347 364 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cpe08g00006 971 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 370 382 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cpe08g00006 971 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 405 419 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cpe08g00006 971 PANTHER DNA HELICASE 161 965 - -
Cpe08g00006 971 Gene3D - 230 334 - -
Cpe08g00006 971 MobiDBLite consensus disorder prediction 38 56 - -
Cpe08g00006 971 ProSitePatterns MCM family signature. 626 634 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cpe08g00006 971 MobiDBLite consensus disorder prediction 115 158 - -
Cpe08g00006 971 Pfam MCM N-terminal domain 238 331 IPR027925 -
Cpe08g00006 971 Pfam MCM OB domain 337 464 IPR033762 -
Cpe08g00006 971 PRINTS Mini-chromosome maintenance (MCM) protein family signature 558 573 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe08g00006 971 PRINTS Mini-chromosome maintenance (MCM) protein family signature 697 705 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe08g00006 971 PRINTS Mini-chromosome maintenance (MCM) protein family signature 670 682 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe08g00006 971 PRINTS Mini-chromosome maintenance (MCM) protein family signature 646 659 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe08g00006 971 PRINTS Mini-chromosome maintenance (MCM) protein family signature 618 632 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe08g00006 971 Pfam Mini-chromosome maintenance protein 2 44 167 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cpe08g00006 971 Gene3D - 497 888 IPR027417 -
Cpe08g00006 971 MobiDBLite consensus disorder prediction 740 754 - -
Cpe08g00006 971 SMART mcm 334 866 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cpe08g00006 971 ProSiteProfiles MCM family domain profile. 517 723 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe08g00006 971 MobiDBLite consensus disorder prediction 8 35 - -
Cpe08g00006 971 MobiDBLite consensus disorder prediction 733 758 - -
Cpe08g00006 971 Pfam MCM P-loop domain 505 727 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe08g00006 971 CDD MCM2 520 864 - -
Cpe08g00006 971 Pfam MCM AAA-lid domain 764 865 IPR041562 -
Cpe08g00006 971 Gene3D - 338 463 IPR012340 -
Cpe08g00006 971 Gene3D - 365 415 - -
Cpe08g00006 971 SUPERFAMILY Nucleic acid-binding proteins 239 486 IPR012340 -
Cpe08g00006 971 MobiDBLite consensus disorder prediction 115 188 - -
Cpe08g00006 971 MobiDBLite consensus disorder prediction 1 68 - -
Cpe08g00006 971 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 161 965 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cpe08g00006 971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 527 868 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00916 Cpe-Chr3:5971105 Cpe08g00006 Cpe-Chr8:55997 0 dispersed
Cpe07g01135 Cpe-Chr7:9957061 Cpe08g00006 Cpe-Chr8:55997 6.40E-104 dispersed
Cpe08g00006 Cpe-Chr8:55997 Cpe17g00747 Cpe-Chr17:5904660 2.86E-101 dispersed
Cpe08g00006 Cpe-Chr8:55997 Cpe15g00556 Cpe-Chr15:6397771 4.07E-104 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00006 K02540 - csv:101219546 1721.06