Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00077 ATGGGAAGTGGTTTCTTCAGCGAATCTGAATTGTGGGTTTCTTCTGTGAATGAAGTTCGAGAAGACCCAGATGAGGATTCCTCCATTGAAGAGGGTGAGGAAATCGGGTCGGATTCGGATTTGGACGAGTCGGTTCAAATGGGGATGGAAAATTTGACGAAGAAGATGAAGAAGAAGAAGAAGAAGAATCATGTTTTGCTTGAGGGGTTTGTGGAGGATGAGGATGAGTTGATGAGGACGAAGAGCTTGACGGATGAGGATCTGGATGAGCTTAAAGGGTGTGTGGATCTAGGGTTTGGTTTCAGTTACGATGAGATTCCGGAGCTCTGCAACACTTTGCCGGCGTTGGAGCTCTGTTATTCCATGAGCCAAAAGTACATGGACGAGCACCAGAAGTCGCCGGAGAGCTCGACGGCGTTGGATTCGTGTTCGTCAGTGTCGAGTCCGATTGCGAATTGGAAGATCTCCAGTCCTGGTGATCATCCAGAAGATGTTAAGGCAAGGCTCAAATTTTGGGCTCAGGCAGTGGCATGTACTGTTAGATTATGCAACTAA 555 47.57 MGSGFFSESELWVSSVNEVREDPDEDSSIEEGEEIGSDSDLDESVQMGMENLTKKMKKKKKKNHVLLEGFVEDEDELMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSMSQKYMDEHQKSPESSTALDSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAVACTVRLCN 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 496056 498227 + Cp4.1LG08g05930.1 Cpe08g00077 473043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00077 184 Pfam Protein of unknown function (DUF1685) 83 138 IPR012881 -
Cpe08g00077 184 PANTHER OSJNBA0071G03.3 PROTEIN 18 184 - -
Cpe08g00077 184 MobiDBLite consensus disorder prediction 16 44 - -
Cpe08g00077 184 MobiDBLite consensus disorder prediction 23 40 - -
Cpe08g00077 184 PANTHER EXPRESSED PROTEIN 18 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00077 - - - csv:101213317 282.722
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe08g00077 Cpe17g00989 CCT
Cpe03g01232 Cpe08g00077 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00016 Cpe-Chr4:174584 Cpe08g00077 Cpe-Chr8:496056 3.25E-24 dispersed
Cpe08g00077 Cpe-Chr8:496056 Cpe12g00506 Cpe-Chr12:4964832 2.17E-70 dispersed
Cpe20g00476 Cpe-Chr20:2752317 Cpe08g00077 Cpe-Chr8:496056 5.73E-06 dispersed
Cpe03g01232 Cpe-Chr3:10005960 Cpe08g00077 Cpe-Chr8:496056 5.06E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1193 . . . . . . . . . . Cma06g01664 . Car06g01406 Car14g01297 . Cpe08g00077 Cpe03g01232 . . . . . . . . . . . . . . Cone14ag0576 . . Cone11ag0614 . . . Cme07g01904 . Blo07g00090 . . . . . Bma06g01421 . Cmo06g01658 . . . Car08g00063 . . Cpe17g00989 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001176 2 2 2 2 2 2 5 2 2 2 1 2 3 2 2 4 2 3 4 2 2 2 2 2 2 2 2 8 6 1 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00077 Cpe_Chr08 FPKM 6.349835 9.784772 10.823217 10.60288 7.476289 6.038815 5.732803 7.884007 8.641561 7.695215