Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00080 ATTTCATCTAAGTGGCTATCTCCTGGACGGAGTTTAGTTTTGGTTCAGATCTCAATGCCTTTCGGTCCCACGGTCGTCGCCAAAAGGTTGGTCGGTACAATGAGAGCACCATCATTACTTGCGCAATGCTTGCCTGGTTTGGTGCCCCAAGATAAAGGAAGCCAGAGCACTCCCTCCATTTCAGAGAGAGATGTCCATCTCCCCTCACCAGCTGTAGAGATTCTCCCTTCAAAGGCAATTCTTCTGTACTTTTCTTCCTGTTATTGCCAACCACTTTTGGGAATACCATTAACACGTTCTTCTCCTTTGAGCAGACAGCTCATCCCTACAAATATGCAGGGGAGAACGTCGATTTGCAAGGGTAGAGTTAGTGTGGCTGATATAATTGGCTTCAATGGATCAGAGTCTATATCTTCAAAGCCTGAAGGCTATCTGAAATCTTGGGACAGTTCCATTGATCTTGTTAATGTCCTTAAGCATGAGATTCGTGACGGACAGCTGAGCTTTAGGGGCAAAAGAGTACTTGAGCTATGGACTTCCTGGAGTTTTTGCTTGCCTCAAGAAAGTGTTAGATGCACAACCATACCGAACGTCCTTGCGAATCTCGAACAAGCTCGGGACAGGCAGAGTAGACAGGCAGAGAGTCCCTTAACTCCGTCCAGACACAGTTTGAGCCCATCGGTACATTTTTACGCGGGCGATTGGGAAGAGCTCCCAACAGTGTTGTCCGTTGTTAGGGGTGATGGATTTGAAGGACCTACTGGAATGAGCTTGAGCTTCTCTGAAGAAGATTTTATGGATGGTTGCAGCAGTCAAGATGGTAGCATCATTGGGCATGAGTCTTCCTCGAGGAGATCGAGGAAACTATCGGGAAGTCGAGCATGGGAGAGGGCGAGTGAGAGCGATCAGGGAGAAGGTGGATACGATGTGATTTTAATGGCGGAAATCCCATATTCACTCAACTCTTTGAAGAAACTATACAGTCTTATGAAGAAGTGTGTGAGGCCACCATATGGAGTGTTATACTTGGCGACCAAGAAGAATTACGTCGGTTTCAATAGCGGAGCGAGGCATTTGAGGAGTTTGGTCGACGAGGAAGGCGTTTTTGGAGCTCACTTGGTGAAGGAGATGACTGACAGAGACATTTGGAAGTTCTTTCTCAAACTAAAATAA 1173 46.55 ISSKWLSPGRSLVLVQISMPFGPTVVAKRLVGTMRAPSLLAQCLPGLVPQDKGSQSTPSISERDVHLPSPAVEILPSKAILLYFSSCYCQPLLGIPLTRSSPLSRQLIPTNMQGRTSICKGRVSVADIIGFNGSESISSKPEGYLKSWDSSIDLVNVLKHEIRDGQLSFRGKRVLELWTSWSFCLPQESVRCTTIPNVLANLEQARDRQSRQAESPLTPSRHSLSPSVHFYAGDWEELPTVLSVVRGDGFEGPTGMSLSFSEEDFMDGCSSQDGSIIGHESSSRRSRKLSGSRAWERASESDQGEGGYDVILMAEIPYSLNSLKKLYSLMKKCVRPPYGVLYLATKKNYVGFNSGARHLRSLVDEEGVFGAHLVKEMTDRDIWKFFLKLK 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 517071 520160 + Cp4.1LG08g06010.1 Cpe08g00080 473046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00080 390 MobiDBLite consensus disorder prediction 275 300 - -
Cpe08g00080 390 MobiDBLite consensus disorder prediction 280 300 - -
Cpe08g00080 390 Gene3D Vaccinia Virus protein VP39 130 366 IPR029063 -
Cpe08g00080 390 PANTHER OS09G0514300 PROTEIN 34 384 - -
Cpe08g00080 390 MobiDBLite consensus disorder prediction 205 225 - -
Cpe08g00080 390 PANTHER HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 34 384 IPR019410 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00080 - - - csv:101212594 547.354
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01237 Cpe08g00080 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01290 Cpe-Chr3:10507193 Cpe08g00080 Cpe-Chr8:517071 1.13E-36 dispersed
Cpe08g00080 Cpe-Chr8:517071 Cpe08g00082 Cpe-Chr8:522694 0 proximal
Cpe03g01237 Cpe-Chr3:10040294 Cpe08g00080 Cpe-Chr8:517071 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1198 . . . . . . . . . . Cma06g01651 Cma14g01468 Car06g01402 Car14g01304 Sed12g0631 Cpe08g00080 Cpe03g01237 Bhi01g02695 Tan10g1290 Cmetu07g1206 . Hepe05g1226 . Lcy11g1139 . . . . . . . . . . Cone11ag0615 . . . Cme07g01895 . . Bda11g00459 . . Bpe13g00737 . Bma06g01395 . Cmo06g01654 Cmo14g01507 . . . . . . . . . . . . . Cla07g01484 Cam07g1580 Cec07g1680 Cco07g1640 Clacu07g1571 Cmu07g1539 Cre07g1916 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005791 1 3 0 1 1 1 2 1 1 1 1 1 4 1 1 2 1 2 3 1 1 1 1 1 1 0 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00080 Cpe_Chr08 FPKM 8.621993 9.078891 10.904814 12.16957 3.875978 8.73336 6.868773 8.366055 8.540884 10.081284