Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00083 ATGATAACAGAAAACATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAACGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAGGTTCTCAGGATGTTAGGGAATGGTCGGTGTGAGGCGACGTGCATAGATGGGACAAAGCGTCTATGCCATATCCGGGGGAAGATGCACAAAAAGGTTTGGATTGCAGCTGGCGATATAATACTTGTCGGTCTTCGCGACTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCCGATGAAGCAAGGCTGTTGAAGGCATATGGTGAACTTCCTGAGAACACTCGTCTCAACGAGGGTATTGCTGGTGGCATCGACGATGAGGATGATGGTGGTGCTGATGACTATCTTGAGTTCGAGGACGAAGATATCGACAAAATTTAG 453 47.02 MITENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 530343 531981 + Cp4.1LG08g05980.1 Cpe08g00083 473049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00083 150 Pfam Translation initiation factor 1A / IF-1 37 98 IPR006196 GO:0003723|GO:0003743|GO:0006413
Cpe08g00083 150 SUPERFAMILY Nucleic acid-binding proteins 7 149 IPR012340 -
Cpe08g00083 150 Hamap Translation initiation factor 1A [eif1a]. 21 115 IPR001253 GO:0003743|GO:0006413
Cpe08g00083 150 ProSiteProfiles S1 domain IF1 type profile. 27 101 IPR006196 GO:0003723|GO:0003743|GO:0006413
Cpe08g00083 150 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE 6 150 - -
Cpe08g00083 150 TIGRFAM eIF-1A: translation initiation factor eIF-1A 19 115 IPR001253 GO:0003743|GO:0006413
Cpe08g00083 150 ProSitePatterns Eukaryotic initiation factor 1A signature. 46 68 IPR018104 GO:0003743|GO:0006413
Cpe08g00083 150 PANTHER EIF-1A 6 150 IPR001253 GO:0003743|GO:0006413
Cpe08g00083 150 CDD S1_IF1A 38 114 IPR001253 GO:0003743|GO:0006413
Cpe08g00083 150 SMART eIF1neu4 33 115 IPR001253 GO:0003743|GO:0006413
Cpe08g00083 150 MobiDBLite consensus disorder prediction 1 29 - -
Cpe08g00083 150 Gene3D - 7 150 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00700 Cpe-Chr4:6933419 Cpe08g00083 Cpe-Chr8:530343 3.15E-89 dispersed
Cpe08g00083 Cpe-Chr8:530343 Cpe16g00399 Cpe-Chr16:5528162 1.92E-102 dispersed
Cpe03g01240 Cpe-Chr3:10063914 Cpe08g00083 Cpe-Chr8:530343 1.89E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00083 K03236 - ini:109155805 265.003