Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00103 ATGGGCTCTGAAACAAACTCCGGTGAGTACCATATTCTCATGCTACCGTTCATGGCCCACGGCCATCTCATCCCCTTCCTCGAGCTCGCTAATTTCATCCACCGGAAATCCTCTGTTTTCACCATCACCATCGCCTGCACCCCCTCCAACATCCAATACCTCCGCTCCGCCGCCGCCGACTCCAAAATCCGCCTCGCCGAGCTCTACTACTCGAGCTCCGACCATGGCCTTCCGCCAAACACCGAGAGTACTGAGAATCTCCCTTTAAATCAAATCGACACCCTGTTTCATTCCTCCACCGCCCTCGAACTTCCCCTTCGGGAACTGATTTCTGACCTCGTCCAAAAGGAAGGCAACCCGCCGCAGTGTATAATCTCCGACGTGTTCTTAGGTTGGTCGGTGGCCGTCGCCAGAAGCTTCAACATTCCAGTTTTCAGTTTCACTACATGCGGTGCTTATGGAACTCTGGCTTACATCTCTCTCTGGTTGAATCTCCCCCACCGTTCATCTACCAGCGATGAGTTTTCTCTCCCGGGGTTCCCGGAAAGTTGCCGTTTCCACCGCTCCCAGCTCCACCGGTTCTTACTCGCCGCCGACGGCACCGATTCCTGGTCCAGATATTTCCGGCCGCAAATCTCCTATTCTTTGAGCTCAGATGGGTGGCTCTGTAACACCGTCGAAGAAGTCGAGTCATTCGGATTGAAACATTTGAGGGATTACATAAAATTGCCCGTCTGGGCAATTGGCCCGCTTCTCCTCCAAACCAGCTCCGGCGGCCGTCGCCGGTGGGGGAAAGAGAAAGATTCCGGCGTGGGTTTAGAAGCTTGCATGAATTGGTTGAATTCCCACCGGAAAAATTCAGTTCTGTACATTTCCTTCGGATCCCAGAACACAATTACCGAGACCCAGATGATGGAACTGGCTTACGGATTGGAGGAAAGCGGGAGCGCATTCATATGGGTAGTGAGGCCGCCATCGGGACACGACATGAAAGCAGAGTTCAGAGCTCATCAATGGCTGCCTGAGCATTTCGAGGATCGAATGAAGGAGACGAATCGAGGATTGGTGATCAGAAATTGGGCACCCCAGTTGGAGATTCTAGCGCACGAATCGGTGGGAGCGTTTTTGAGCCATTGTGGGTGGAATTCGACGGTGGAAAGCTTGAGCCAGGGAGTGCCGGTGATCGGGTGGCCGATGGCAGCAGAGCAGGCGTACAATTCAAAGATGCTGGTGGAGGAAATGGGGATTGGAGTGGAGCTGACAAGGGGGAAGGAGAGTGAGATTAAGAGAGGAAGAGTGAAGGAGGTGATAGAAATGGTGATGGGGGAATGTGGGGAAGGGGAAGAGATGAGGAACAAGGCCGCCATTGTTAAGGACAAGATGAGAGCTGCAGTTATGGATGAACAAAAGGGTTCCTCTAACACCAACTTGGTGGACTTTCTTGAATTCATTCAAGCCAAACAGAAGAGTCTAAACAAAATCAAATAA 1488 52.15 MGSETNSGEYHILMLPFMAHGHLIPFLELANFIHRKSSVFTITIACTPSNIQYLRSAAADSKIRLAELYYSSSDHGLPPNTESTENLPLNQIDTLFHSSTALELPLRELISDLVQKEGNPPQCIISDVFLGWSVAVARSFNIPVFSFTTCGAYGTLAYISLWLNLPHRSSTSDEFSLPGFPESCRFHRSQLHRFLLAADGTDSWSRYFRPQISYSLSSDGWLCNTVEEVESFGLKHLRDYIKLPVWAIGPLLLQTSSGGRRRWGKEKDSGVGLEACMNWLNSHRKNSVLYISFGSQNTITETQMMELAYGLEESGSAFIWVVRPPSGHDMKAEFRAHQWLPEHFEDRMKETNRGLVIRNWAPQLEILAHESVGAFLSHCGWNSTVESLSQGVPVIGWPMAAEQAYNSKMLVEEMGIGVELTRGKESEIKRGRVKEVIEMVMGECGEGEEMRNKAAIVKDKMRAAVMDEQKGSSNTNLVDFLEFIQAKQKSLNKIK 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 655968 657455 + Cp4.1LG08g05750.1 Cpe08g00103 473069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00103 495 Gene3D Glycogen Phosphorylase B; 2 269 - -
Cpe08g00103 495 Gene3D Glycogen Phosphorylase B; 274 466 - -
Cpe08g00103 495 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 278 421 IPR002213 GO:0008194
Cpe08g00103 495 ProSitePatterns UDP-glycosyltransferases signature. 360 403 IPR035595 -
Cpe08g00103 495 PANTHER GLYCOSYLTRANSFERASE 9 489 - -
Cpe08g00103 495 CDD GT1_Gtf-like 10 481 IPR002213 GO:0008194
Cpe08g00103 495 PANTHER GLYCOSYLTRANSFERASE 9 489 - -
Cpe08g00103 495 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 8 484 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00103 - - - csv:101206336 773.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01395 Cpe-Chr1:8394326 Cpe08g00103 Cpe-Chr8:655968 1.31E-28 dispersed
Cpe03g00211 Cpe-Chr3:1051135 Cpe08g00103 Cpe-Chr8:655968 4.02E-14 dispersed
Cpe05g00513 Cpe-Chr5:3032665 Cpe08g00103 Cpe-Chr8:655968 3.08E-49 dispersed
Cpe08g00103 Cpe-Chr8:655968 Cpe13g00936 Cpe-Chr13:7900922 1.67E-10 dispersed
Cpe09g00241 Cpe-Chr9:1392488 Cpe08g00103 Cpe-Chr8:655968 3.05E-25 dispersed
Cpe17g00390 Cpe-Chr17:2856181 Cpe08g00103 Cpe-Chr8:655968 1.57E-41 dispersed
Cpe20g00278 Cpe-Chr20:1558254 Cpe08g00103 Cpe-Chr8:655968 6.39E-40 dispersed
Cpe08g00103 Cpe-Chr8:655968 Cpe01g01275 Cpe-Chr1:7670302 7.25E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1058 . . . . . . . . Cmo08g00841 . . . . . . Cpe08g00103 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma08g00871 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008183 1 1 4 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00103 Cpe_Chr08 FPKM 27.323309 33.071369 8.441875 8.986401 10.630404 10.63618 9.970795 1.072559 1.361858 1.118207