Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00105 AGAGAGAGAAGGGTGGTAACATCAACGTCAAGTAAGATCCGCCATATGTACCAATCAACTTCCTCCTCTTCTTCCTCTCACAATTCCATGCCCTCCTCCCACGCCGGTGGTGGAGGTCTCACTCGCTATGGTTCTGCACCTGGCTCTTTGCTGAATTCGGCGGTCGATTCTGTGATCGGGAAACGGCATCCAGACTCCGATGCGTTTCTCCGTACGCCGCCGTCGTTTGGCGGTCACTTCTTCTCCTCCGCTGAGTCTTCCGTTGTGGAATCCTCTCGGAAGGTTGTTCAATCGTCGTCTACTTCCAACGATCTGAAATCGTCGGCGGTAGCGGCGGCTGCCTTGCAACGGTCGTACGGACTCCACGATTTGGCGCTTGAGGATTTCTCTACGGCGAGAGATTTTAATAGCAATGGTGGTCAATCGTCTTCCTCTTCGCCGTTGGTTCGCCAGAGAAGCTCGCCGGCTGGATTTCTCGGCCATCTCTCCGTCGCTGAAGGAACCGGAGGGTTTTCATTGACAAGGGGAGGAGGAGGAGGAATTGGAAGGTTAAAGTCACAGCTGAGCTTCAGTGGTGGGCAGGATTCGGTGTCTCAAATGTCTTCCATGAGTGAAAGTGTTGTGGAGGGTAGCAGCTCCCATTCCTTTGCCCCCACAGCCTTTGCCATGGACTCTTGGGACACCTCCAACTCCATTGCCTTCGCTGCCCCTCATCCCAAACGATCCAAGCTTCTTCACTCCGATGGAGACTTTTTCACCGGCCTCGACTCTCAGTTTAGTCTACCACAAACAAGTTTTGAAATGGCAACTGTGGAGAGGTTGCTTCAAATCCCAGAAGACTCCGTGCCTTGTAAGATCCGAGCCAAACGTGGCTGTGCCACTCATCCTCGCAGTATCGCCGAAAGGGAGAGGAGAACTAGAATCAGTGGAAAATTGAAGAAACTTCAAGAACTTGTTCCGAACATGGATAAGCAAACGAGCTACTCAGACATGTTGGACTTAGCAGTGCAGCACATCAAAGGTCTTCAAAATCAAATTCAGAAGCTTAACAAAGAAGTTCAGAATTGCACGTGTGGAAGCAAAGAGTGCTCGTAA 1095 51.23 RERRVVTSTSSKIRHMYQSTSSSSSSHNSMPSSHAGGGGLTRYGSAPGSLLNSAVDSVIGKRHPDSDAFLRTPPSFGGHFFSSAESSVVESSRKVVQSSSTSNDLKSSAVAAAALQRSYGLHDLALEDFSTARDFNSNGGQSSSSSPLVRQRSSPAGFLGHLSVAEGTGGFSLTRGGGGGIGRLKSQLSFSGGQDSVSQMSSMSESVVEGSSSHSFAPTAFAMDSWDTSNSIAFAAPHPKRSKLLHSDGDFFTGLDSQFSLPQTSFEMATVERLLQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYSDMLDLAVQHIKGLQNQIQKLNKEVQNCTCGSKECS 364
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 667528 672843 - Cp4.1LG08g05690.1 Cpe08g00105 473071
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00105 364 Gene3D - 293 361 IPR036638 GO:0046983
Cpe08g00105 364 Coils Coil 332 359 - -
Cpe08g00105 364 SMART finulus 298 348 IPR011598 GO:0046983
Cpe08g00105 364 CDD bHLH_AtbHLH_like 297 349 IPR045239 -
Cpe08g00105 364 PANTHER TRANSCRIPTION FACTOR BHLH129 39 357 - -
Cpe08g00105 364 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 39 357 - -
Cpe08g00105 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 292 342 IPR011598 GO:0046983
Cpe08g00105 364 MobiDBLite consensus disorder prediction 1 44 - -
Cpe08g00105 364 MobiDBLite consensus disorder prediction 10 35 - -
Cpe08g00105 364 Pfam Helix-loop-helix DNA-binding domain 297 343 IPR011598 GO:0046983
Cpe08g00105 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 295 355 IPR036638 GO:0046983
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00105 Cpe-Chr8:667528 Cpe18g00157 Cpe-Chr18:3200521 1.99E-46 dispersed
Cpe03g01271 Cpe-Chr3:10292768 Cpe08g00105 Cpe-Chr8:667528 1.04E-141 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49817 PF00010 HLH 9.80E-09 No_clan Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00105 - - csv:101205392 453.751