Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe08g00105 | AGAGAGAGAAGGGTGGTAACATCAACGTCAAGTAAGATCCGCCATATGTACCAATCAACTTCCTCCTCTTCTTCCTCTCACAATTCCATGCCCTCCTCCCACGCCGGTGGTGGAGGTCTCACTCGCTATGGTTCTGCACCTGGCTCTTTGCTGAATTCGGCGGTCGATTCTGTGATCGGGAAACGGCATCCAGACTCCGATGCGTTTCTCCGTACGCCGCCGTCGTTTGGCGGTCACTTCTTCTCCTCCGCTGAGTCTTCCGTTGTGGAATCCTCTCGGAAGGTTGTTCAATCGTCGTCTACTTCCAACGATCTGAAATCGTCGGCGGTAGCGGCGGCTGCCTTGCAACGGTCGTACGGACTCCACGATTTGGCGCTTGAGGATTTCTCTACGGCGAGAGATTTTAATAGCAATGGTGGTCAATCGTCTTCCTCTTCGCCGTTGGTTCGCCAGAGAAGCTCGCCGGCTGGATTTCTCGGCCATCTCTCCGTCGCTGAAGGAACCGGAGGGTTTTCATTGACAAGGGGAGGAGGAGGAGGAATTGGAAGGTTAAAGTCACAGCTGAGCTTCAGTGGTGGGCAGGATTCGGTGTCTCAAATGTCTTCCATGAGTGAAAGTGTTGTGGAGGGTAGCAGCTCCCATTCCTTTGCCCCCACAGCCTTTGCCATGGACTCTTGGGACACCTCCAACTCCATTGCCTTCGCTGCCCCTCATCCCAAACGATCCAAGCTTCTTCACTCCGATGGAGACTTTTTCACCGGCCTCGACTCTCAGTTTAGTCTACCACAAACAAGTTTTGAAATGGCAACTGTGGAGAGGTTGCTTCAAATCCCAGAAGACTCCGTGCCTTGTAAGATCCGAGCCAAACGTGGCTGTGCCACTCATCCTCGCAGTATCGCCGAAAGGGAGAGGAGAACTAGAATCAGTGGAAAATTGAAGAAACTTCAAGAACTTGTTCCGAACATGGATAAGCAAACGAGCTACTCAGACATGTTGGACTTAGCAGTGCAGCACATCAAAGGTCTTCAAAATCAAATTCAGAAGCTTAACAAAGAAGTTCAGAATTGCACGTGTGGAAGCAAAGAGTGCTCGTAA | 1095 | 51.23 | RERRVVTSTSSKIRHMYQSTSSSSSSHNSMPSSHAGGGGLTRYGSAPGSLLNSAVDSVIGKRHPDSDAFLRTPPSFGGHFFSSAESSVVESSRKVVQSSSTSNDLKSSAVAAAALQRSYGLHDLALEDFSTARDFNSNGGQSSSSSPLVRQRSSPAGFLGHLSVAEGTGGFSLTRGGGGGIGRLKSQLSFSGGQDSVSQMSSMSESVVEGSSSHSFAPTAFAMDSWDTSNSIAFAAPHPKRSKLLHSDGDFFTGLDSQFSLPQTSFEMATVERLLQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYSDMLDLAVQHIKGLQNQIQKLNKEVQNCTCGSKECS | 364 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 667528 | 672843 | - | Cp4.1LG08g05690.1 | Cpe08g00105 | 473071 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe08g00105 | 364 | Gene3D | - | 293 | 361 | IPR036638 | GO:0046983 | |
| Cpe08g00105 | 364 | Coils | Coil | 332 | 359 | - | - | |
| Cpe08g00105 | 364 | SMART | finulus | 298 | 348 | IPR011598 | GO:0046983 | |
| Cpe08g00105 | 364 | CDD | bHLH_AtbHLH_like | 297 | 349 | IPR045239 | - | |
| Cpe08g00105 | 364 | PANTHER | TRANSCRIPTION FACTOR BHLH129 | 39 | 357 | - | - | |
| Cpe08g00105 | 364 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 39 | 357 | - | - | |
| Cpe08g00105 | 364 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 292 | 342 | IPR011598 | GO:0046983 | |
| Cpe08g00105 | 364 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
| Cpe08g00105 | 364 | MobiDBLite | consensus disorder prediction | 10 | 35 | - | - | |
| Cpe08g00105 | 364 | Pfam | Helix-loop-helix DNA-binding domain | 297 | 343 | IPR011598 | GO:0046983 | |
| Cpe08g00105 | 364 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 295 | 355 | IPR036638 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe08g00105 | Cpe-Chr8:667528 | Cpe18g00157 | Cpe-Chr18:3200521 | 1.99E-46 | dispersed | |
| Cpe03g01271 | Cpe-Chr3:10292768 | Cpe08g00105 | Cpe-Chr8:667528 | 1.04E-141 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49817 | PF00010 | HLH | 9.80E-09 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe08g00105 | - | - | csv:101205392 | 453.751 |