Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00116 ATGGAGAAGGAGTTCTTCATGAACGATGGAAGTAGTTTTTATGGGATGGATTCGAGTGTGTTGTTCAATTCCAATTGGGAAAATTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGTTCGATTGTGTCTTCTCCGGCGAATTCACACGCCGGGGCTGTAATCGGCGGTGGAAGTGGCGGCGGCGGCGGCGACAACTTGATGATGCGAGAATTGATTGGAAGGCTTGGAAGCATTTGTAGTTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGGACGAACAATAATAGTACCAATACTTCTTGTTACAATACGCCTTTGAATTCCCCTCCGATGAAAGGAAATTTATCTGTCGGTCACCATCAAAATCTGGCTCCATTTTCGGCTGATCCAGGTTTCGCTGAAAGGGTTGCGAGATTTTCTTGCTTTGGGAACAAGAATCTTGCAGTGAATGGGCAATTGTGTTCTAATGAAACTCAAGAATTGAGCAACAAATCAATGGCTGGAGCTGGTGTGGAATCTGGCAAGCTTTCTAGGGTTTCAAGTAACAAATCCTTCAATGTTAGTGGAATTGGATCTCAAATGGGAGTTCAGAAGGGGAATTCTATGGCTAACAAGAAAGTTATGAACAGGTTTTCGAGGTCTTCGACCCCTGAAAACGACGATTCGCGGGAGGGATCGTCGGTTTCGGAGCAGATTACAGCTGGGGAATTAGGATTCAAAGTTAACACTAGGAAAAGGAAATCAGCTCAAACCGGTGAAGCAAAGAATGTGAAGGCTGCAGGGGAGAATCGTGAACCAAATGGCAAGAAAATCAAACCAGAGATGGATGCTGCAAAGGGGAAGGCTGAGGCAAAAGATGCAACTCAGAAACAAAACAATGATAATTCAAAGCCTCCAGAGCCTCCAAAGGATTATATCCATGTTAGAGCTAAAAGGGGTCAAGCTACTGATAGCCATAGTTTAGCTGAAAGAATCCGACGAGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTCCCCGGTTGCGATAAGATAACTGGGAAGGCAGTGATGCTTGATGAAATTATAAACTATGTACAATCGTTGCAGCACCAAGTTGAGTTTCTTTCAATGAAATTGGCTACTGTCAATCCAAGGATGGATTTTAACATGGAAACTCTTTTGCCAAAGGATATCTTCAAAGGTTCGAGTTCGTTACCGCATACGACTTACCCTATTGATTCGTCTGTGCCCACATTTGCATATGAGTATCAATCTATGAACATTCCTCCTCTTCATAGTGATCAAACGCAGGGTGGATACCGCGAAATGGGGAATGGAATCCAAATTTCCAAGTTTTGGGAGGATGAACTCCACAGTGTAGTTCAGATGGGTTATGGACAAACCCAGCTGCAGAATCCTCATGGTGAGATGAAAAGTGAATTGTAA 1443 43.52 MEKEFFMNDGSSFYGMDSSVLFNSNWENSMDQSDLFESTLSSIVSSPANSHAGAVIGGGSGGGGGDNLMMRELIGRLGSICSSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPMKGNLSVGHHQNLAPFSADPGFAERVARFSCFGNKNLAVNGQLCSNETQELSNKSMAGAGVESGKLSRVSSNKSFNVSGIGSQMGVQKGNSMANKKVMNRFSRSSTPENDDSREGSSVSEQITAGELGFKVNTRKRKSAQTGEAKNVKAAGENREPNGKKIKPEMDAAKGKAEAKDATQKQNNDNSKPPEPPKDYIHVRAKRGQATDSHSLAERIRREKISKRMKFLQDLVPGCDKITGKAVMLDEIINYVQSLQHQVEFLSMKLATVNPRMDFNMETLLPKDIFKGSSSLPHTTYPIDSSVPTFAYEYQSMNIPPLHSDQTQGGYREMGNGIQISKFWEDELHSVVQMGYGQTQLQNPHGEMKSEL 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 747635 750057 + Cp4.1LG08g05630.1 Cpe08g00116 473082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00116 480 Gene3D - 314 388 IPR036638 GO:0046983
Cpe08g00116 480 PANTHER BHLH TRANSCRIPTION FACTOR 21 422 - -
Cpe08g00116 480 CDD bHLH_AtBPE_like 307 392 - -
Cpe08g00116 480 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 317 367 IPR011598 GO:0046983
Cpe08g00116 480 SMART finulus 323 373 IPR011598 GO:0046983
Cpe08g00116 480 Pfam Helix-loop-helix DNA-binding domain 321 368 IPR011598 GO:0046983
Cpe08g00116 480 MobiDBLite consensus disorder prediction 212 308 - -
Cpe08g00116 480 MobiDBLite consensus disorder prediction 243 293 - -
Cpe08g00116 480 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 21 422 IPR024097 GO:0006355
Cpe08g00116 480 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 315 387 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00116 Cpe-Chr8:747635 Cpe17g01125 Cpe-Chr17:8540065 2.14E-82 dispersed
Cpe03g01282 Cpe-Chr3:10393240 Cpe08g00116 Cpe-Chr8:747635 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49819 PF00010 HLH 7.50E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00116 - - cmax:111470804 893.649