Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00117 ATGAAGCATTTTATGCAGCCAAGAAACGGTATCTTGCGAGATACCCATGCCGCCGACCAGCCTTCTTCGTCGTGCCCTAGCGCCGGAATCAAGGGAAGACCCCCTAGGAAGCCCAAGTCCTCCAAGGAGAATGCTCCGCCTTCAGATCCGAACTCCATGCTTCCAGATTCCAAACCCTCGCCGGCCAAGTCGAAGAGCCCGCTCCCTCCCCGTCCTCCGTCTTCCAATCCACTCAAGCGGAAGCTCAGTATGGAGGCACTTGCTGAGAATTCGATCCCTGGGTTGTCTGATTCTGGTGTGAAGGTGGTAGTGCGGATGAGGCCATCGAGCAAGGATAGAGACGAAGGGGATAATATAATACAGAAAGTTACTGATGATTCTTTGTCAATTAATGGCCAAACCTTTACTTTTGATGCTGTTGCTGACACAGAGGCAACGCAGCTTGATATCTTCCAGCTTGTAGGAGAACCTCTAGTTGAAAATTGTATGGCAGGTTTCAACAGTTCCGTATTTGCATATGGACAGACGGGAAGTGGAAAGACATACACCATGTGGGGTCCAACCAATTCTTTGTCAGATGACAATTTATTAAACGAACAAAAAGGCTTAACTTTCCGTGTTTTTGAACGACTTTTTGCTCGTATAAATGAGGAACAAGTGAAGCATGCTGACAAGTTACTTAAGTATCAGTGTTCCTGTTCTTTTCTCGAGATTTACAATGAGCAAATCACTGATTTATTGGATCCAAATCAGAGAAACCTCCAGATTAGAGAAGATGTAAAGTCTGGTGTTTATGTTGAAAATCTAACGGAGGAGTGTGTATCAACCATGGCAGACGTTACTCAGCTTTTAATGAAGGGTTTATCAAATAGGAGGACTGGTGCAACAAGTATTAATTCTGAGAGTTCGCGGTCGCATACTGTTTTTACCTGTGTTGTTGAATCTCGATCCAAGAGGATGGCAGATGGTTTAAGTAGCTTTAAAACGAGTAGAATAAATCTTGTTGATTTAGCTGGTTCCGAGAGGCAGAAGCTAACAGGTGCAGCTGGGGAGCGTTTGAAGGAAGCAGGAAATATCAACAGATCACTCTCGCAACTTGGGAATCTAATCAATATTCTTGCCGAGATTTCTCAAACTGGAAAACAAAGGCACATCCCATACAGAGACTCCAGGCTCACTTTCCTATTGCAAGAATCTCTTGGGGGAAATGCAAAACTAGCGATGGTTTGCGCCATTTCTCCATCACAAAGCTGCAAGAATGAAAGTTTTAGTACATTGAGGTTTGCCCAGCGTGCAAAAGCTATAAAAAACAAAGCTGTTGTTAATGAAGTTATGCAAGATGATGTGAATCACTTGCGTGAAGTGATACGGCAGCTCAGGGATGAACTACACAGACTAAAGTCAAATGGAAATAGTTCAAATGACGCAAATGGAGGACACTCTGCAGCATGGATCCGTAGAAGTTTATATCTACTAAAATCTAGTATAAGTCGTCCTATCACATTACCTCATGTGGATGATGATGGTGATGAAGAAATGGAAATTGACGAGGAAGCTGTTGAGAAGCTCTGTGATCAACTGGACAAACAAAATACTGGTTCTGAGGCTAGTGAAGATAAGGAAACTGAAACTGTTAAATTAGGTTCATCAATTGCCTTAGAAGGAAATGAGTTTTCTGGAACTGAATATCGAAAGAAAAGTTCTGATGTTTTAGATGTAAACATGGAAGAGGAAACATCTGTACAAGACGAGGTTATGATTGTTGGTACAACAGAAGAGCCGGTTTACGATACTCCAGTATGTTCCAGTGCTGACTTGACAAACCATCAGAACCTTGAAGCACAAACTCAAATAGCAACAAACTTGCTTGACCAACTCTTCTCAGGTGAACCTTCTGAGAATAATATTGTGAGCTCTTTGATGGAGGAGGGAGTAAAAAGTGGAGAACTAAAAACTCCAGGAGATGGCCCCTTGTGTACATCCTCTGAACCTCTCAGTGGATATCAGACTAACAAGTCCGATTTAGATACACTCAACAATTCCTCAAATGGAATTCTTAATTGTGTTTCTCCTCCAAGTCTCAGCATAGTTCCTTGTGATGTGTCGCCAGCTCTTAAATCCCCTACTGCAAGTGCTTCACCTAGAATCAGCGATAGTAGGAAAAGCTTGAGGACTTCAATGATGTTGTCTGCTTCACAGAAAGATCTTCAAGCTGAGACTAAGCTTGGCTTAGATCTTCTGCAAAAACCACTTGAAAAGTCCTTGAGATGGAGCTCCGCTAATGCACTATCAATGTCTACCCAGAGTAAGAATACTGCAGTAACTACAGAGCAGTTGGCTGCAAGCATCCGAAATGGGCTTGAAATTATTGATAGTTGTCGGCAGAGCTCAGCATTGAGAAGGTCTTCATTCAGATTTTCATGTAAACCTGCAGAAAAGGTTAATATGCCAATAAACAAAATTGATGTTGGCGTGCAAACATCATGCGGTGATGAGGCTGCTGGTGAAAACCTTTTTATGTGCAGTTGTTGCAGAATTAGAAAGCAGCTGGAGGTTGGAGAGGAGAAAGGCAGCTCAGATCTGCAATTAGTACCTGTGGATGGTCCAGACTCTGCTGAGAGGTCCAGGATACAAGTTCCTAAAGCAGTTGAGAAAGTTCTTGCTGGGGCTATCAGAAGAGAAATGGCACTTGAAGAATACTGCAACAAGCAAGCATTTGATATTAATCAACTCAACCGTTTGGTACAACAGTACAAACATGAGAGAGAATGCAATGCTGTACTTGGGCAAGCCAGAGAAGACAAAATTATTCGCCTTGAGAGCCTCATGGATGGTGTTTTACCATCTGAGGAGTTCATGGAGGAGGAACTATTGTCCCTCAAATATGAGCATAAGGTTTTAAAGGAAAAATATGAGAATCACCCTGAAGTCCTACAGACACGAATGGAGTTGAAAAAAGTTCAAGATGAGTTGCAAAGTTATAGGAATTTCTGTGACTTGGGCGAGAGAGAAGTGCTAATGGAAGAGATTCAGGATTTAAGAAGTCAGCTGCAATATTACACTGATTCACCTTCCACATCCTCGCGAATGCAAAAGTCTCTTTTGCAATTGACTTATTCTGAACCTAGTAGCTCTACACCTCTTGGTGCAATCCCAGAGTTAATAGAAGAGAGTGTTGAGGAAAAACTTGAACAGGAGAGAGTTCGTTGGACTGAGGCGGAGGGCAAGTGGATCTCTCTTTCAGAGGAACTGAGAAGTGAACTTGAAGCGAGCAGGTTGCTAGCAGAAAAAAGAAAACGAGAGTTTGAAGCTGAGAAGAAATGTGCTCAAGAGTTGGAGGAAGCTATGCAAATGGCAATGGCAGTGCATGCACGGTTACTAGAACAGTATGCAGACTTGGAAGAAAAGCACATGCAACTGCTTTTAAGACATAGAAAGATACAGGATGGAATTGGGGATGTCAAAAAGGCAGCTGCTAGAGCAGGAGTTAAGGGTGCAGAATCCAAGTTCATAAACACCCTTGCTGCTGAAATTTCTGCACTAAAAGTTGAAAGAGAACGGGAAAGACGCTATCTAAGAGATGAGAACAAGGGGCTTCAAGCTCAATTGAGAGATACTGCTGAAGCTGTGCAGGCTGCGGGCGAATTGCTTGTGCGGTTAAAAGAAGCAGAAGATGGAGTTGCTGCTGCTCAGAAGCGAGCAATTGAAGCTGAGCAAGAAGTCGAGAAGGCCTACAAGCAGATTGATAAATTGAAGAAAAAACTCGAAAAGGAAGCTACGAGGCCTGCTTACGATGATGAAACTAGCAAAGCCAAATACGACATAGACGAAACCCTCGATCAGGGCTGGAGAGAGGAATTTGAGCCATTCTACAATGGTGATGATGGTGAGCTACCTAAACTCTCAGAACCTTCCTGGTTTTCTGGATATGATAGATGCAACATATAG 3948 42.93 MKHFMQPRNGILRDTHAADQPSSSCPSAGIKGRPPRKPKSSKENAPPSDPNSMLPDSKPSPAKSKSPLPPRPPSSNPLKRKLSMEALAENSIPGLSDSGVKVVVRMRPSSKDRDEGDNIIQKVTDDSLSINGQTFTFDAVADTEATQLDIFQLVGEPLVENCMAGFNSSVFAYGQTGSGKTYTMWGPTNSLSDDNLLNEQKGLTFRVFERLFARINEEQVKHADKLLKYQCSCSFLEIYNEQITDLLDPNQRNLQIREDVKSGVYVENLTEECVSTMADVTQLLMKGLSNRRTGATSINSESSRSHTVFTCVVESRSKRMADGLSSFKTSRINLVDLAGSERQKLTGAAGERLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKNESFSTLRFAQRAKAIKNKAVVNEVMQDDVNHLREVIRQLRDELHRLKSNGNSSNDANGGHSAAWIRRSLYLLKSSISRPITLPHVDDDGDEEMEIDEEAVEKLCDQLDKQNTGSEASEDKETETVKLGSSIALEGNEFSGTEYRKKSSDVLDVNMEEETSVQDEVMIVGTTEEPVYDTPVCSSADLTNHQNLEAQTQIATNLLDQLFSGEPSENNIVSSLMEEGVKSGELKTPGDGPLCTSSEPLSGYQTNKSDLDTLNNSSNGILNCVSPPSLSIVPCDVSPALKSPTASASPRISDSRKSLRTSMMLSASQKDLQAETKLGLDLLQKPLEKSLRWSSANALSMSTQSKNTAVTTEQLAASIRNGLEIIDSCRQSSALRRSSFRFSCKPAEKVNMPINKIDVGVQTSCGDEAAGENLFMCSCCRIRKQLEVGEEKGSSDLQLVPVDGPDSAERSRIQVPKAVEKVLAGAIRREMALEEYCNKQAFDINQLNRLVQQYKHERECNAVLGQAREDKIIRLESLMDGVLPSEEFMEEELLSLKYEHKVLKEKYENHPEVLQTRMELKKVQDELQSYRNFCDLGEREVLMEEIQDLRSQLQYYTDSPSTSSRMQKSLLQLTYSEPSSSTPLGAIPELIEESVEEKLEQERVRWTEAEGKWISLSEELRSELEASRLLAEKRKREFEAEKKCAQELEEAMQMAMAVHARLLEQYADLEEKHMQLLLRHRKIQDGIGDVKKAAARAGVKGAESKFINTLAAEISALKVERERERRYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEDGVAAAQKRAIEAEQEVEKAYKQIDKLKKKLEKEATRPAYDDETSKAKYDIDETLDQGWREEFEPFYNGDDGELPKLSEPSWFSGYDRCNI 1315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 753865 762147 - Cp4.1LG08g05580.1 Cpe08g00117 473083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00117 1315 Gene3D Kinesin motor domain 95 469 IPR036961 -
Cpe08g00117 1315 ProSiteProfiles Kinesin motor domain profile. 99 435 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe08g00117 1315 Coils Coil 442 469 - -
Cpe08g00117 1315 Coils Coil 1109 1143 - -
Cpe08g00117 1315 PANTHER CENTROMERE PROTEIN E 65 1315 - -
Cpe08g00117 1315 PANTHER KINESIN-LIKE PROTEIN KIN-12B 65 1315 - -
Cpe08g00117 1315 SMART kinesin_4 97 443 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe08g00117 1315 MobiDBLite consensus disorder prediction 1 78 - -
Cpe08g00117 1315 MobiDBLite consensus disorder prediction 44 59 - -
Cpe08g00117 1315 ProSitePatterns Kinesin motor domain signature. 330 341 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cpe08g00117 1315 Coils Coil 1085 1105 - -
Cpe08g00117 1315 Coils Coil 1220 1261 - -
Cpe08g00117 1315 Pfam Kinesin motor domain 119 435 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe08g00117 1315 MobiDBLite consensus disorder prediction 647 666 - -
Cpe08g00117 1315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 468 IPR027417 -
Cpe08g00117 1315 MobiDBLite consensus disorder prediction 62 76 - -
Cpe08g00117 1315 PRINTS Kinesin heavy chain signature 165 186 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe08g00117 1315 PRINTS Kinesin heavy chain signature 296 313 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe08g00117 1315 PRINTS Kinesin heavy chain signature 331 349 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe08g00117 1315 PRINTS Kinesin heavy chain signature 385 406 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00117 K10400 KIF15; kinesin family member 15 - csv:101216258 2043.08
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe08g00117 Cpe12g00346 CCT
Cpe08g00117 Cpe12g00346 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00117 Cpe-Chr8:753865 Cpe14g00763 Cpe-Chr14:5988947 7.19E-08 dispersed
Cpe04g01359 Cpe-Chr4:11070300 Cpe08g00117 Cpe-Chr8:753865 4.17E-06 transposed
Cpe12g00346 Cpe-Chr12:2329925 Cpe08g00117 Cpe-Chr8:753865 2.13E-16 transposed
Cpe03g01283 Cpe-Chr3:10400387 Cpe08g00117 Cpe-Chr8:753865 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g244 Blo01g00025 . . . . . . Bma05g00987 . . . . Car06g01297 . . Cpe08g00117 . . . . . . . . Cla06g00398 Cam06g0419 Cec06g0427 Cco06g0427 Clacu06g0406 Cmu06g0406 Cre06g1185 . Cone15ag0698 . . . . . . . Blo07g00066 Bda11g00439 . Bpe05g00795 Bpe13g00757 . Bma06g01400 . . . . . . . Cpe12g00346 . Bhi12g01988 . . . . . Lcy12g0897 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005762 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00117 Cpe_Chr08 FPKM 15.754024 15.721544 20.392946 24.937746 13.423037 14.683455 14.685624 13.74966 19.023455 0.0