Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00118 ATGTCAGAAATGGCGAACGCAGATCCCGAAGGAATCGATGGAGTTCGTATGACATGGAATGTTTGGCCTCGTACCAAAGTTGAGGCTAGCAAGTGCGTTGTTCCACTCGCTGCTTCGATCGCTCCGATCCGTCCTCACCCTGAGATCCCAACTCTCCCTTACGCGCCGCTCCGTTGTAAGTCTTGCTCCGCGGTTCTCAACCCATTTTCCCGTGTTGACTTTACCGCCAAGATTTGGATCTGTCCGTTTTGCTACCAGAGATGTCATTTTCCTCCTCATTATGCCATGATCTCTGAGACCCATCTTCCTGGGGAGCTTTATCCTCAGTACACCACTGTTCAATATGCTATTCCGCAATCAATTAACCCCAATCCTGCTATGGATTCGGCCCAGCAGGCGAATCCTTCCCCGGTTTTTCTGTTTCTGCTTGATACCTGCATGATCGAGGAGGAATTGGGGTTTGTGAAATCCGCGCTTAAAAGGGCGATCGGGTTGTTGCCTGATAATGCACTTGTTGGATTTGTTTCGTTTGGGACTCAGGTTCAGGTTCATGAATTGGGATTCTCTGATATGTCTAAGGTGTATGTGTTTCGGGGTACGAAGGAGGTTTCTAAGGAGCAGGTTTTGGAGCAATTGGGTCTTGCCATTGGTGGGCGGAGAGTTGCTGGAGCGTATCAAAAGGGGGTCCAGAATGGATTCCCTAATTCCGGTGTTACACGTTTTTTGCTGCCTGCTTCTGAATGCGAATATACCCTCAATTCCTTGTTGGATGAACTTCAAACGGATCAATGGCCTGTTTCTCCCGGTAATCGGGCATCTCGATGCACCGGAGTGGCGTTGAGTGTTGCAGCTAGTTTGCTTGGAGCTTGTTTGCCTGGCACTGGTGCTCGAATTATCGCTTTGGTTGGTGGACCATGCACAGAAGGGCCTGGCACGATTGTTTCCAAAGATCTATCAGACCCAGTACGTTCACATAAAGACCTCGACAAAGATGCAGCCCCTTACTTTAAAAAAGCAATCAAATTCTATGAAAGTCTTGCAAAACAACTGGTTGGCCAAGGCCACGTCTTGGATCTTTTTGCATCAGCACTTGATCAGGTTGGTGTTGCGGAAATGAAAGTTACAGTAGAAAAAACTGGTGGCCTTGTTGTTCTGGCTGAAAGCTTTGGACATTCGGTATTTAAGGACTCTTTCAAGCGTGTGTTTGAAGGAGGGGAGCACTCTCTTGGTCTTTGCTTTAATGGAACCCTTGAGATCAATTGTTCGAAGGATATCAAAATTCAGGGGATAATTGGACCTTGCACATCTTTGGAGAAGGTCAAAGGTCCTGCTATTGCCGATACTGTTATTGGGGAGGGCAATACAACATTGTGGAAAATGTGTGGTCTTGACAAAAGCACTTGTTTGACAGTGTTTTTTGATCTTTCATCAAGTGATAGATCAAGTTCTCCAGGAACTGCAAATCCACAGTTGTATTTGCAGTTTCTTACTAGTTATCAAGATCCTGAAGGTCAGTCAATGCTTCGGGTTACAACTGTCACTAGAAGATGGATAGACACTGCAGTTAGCTCAGAGGAATTGGTGCAAGGGTTTGATCAAGAGGCTGCTGCAGTTGTCGTGGCCAGATTAACTTCCTTGAAAATGGAGATGGAGGAGGGATTTGATGCTATTCGATGGTTGGATCGATCCTTGATTCGCCTCTGTTCTAAGTTTGGTGATTACCGGAAAGACGATCCATCTTCCTTTACTCTAAATCCTTCATTTTCTTTGTATCCTCAGTTCTTGTTTAATTTGCGGCGTTCACAATTTGTTCAGGTGTTTAACAACAGTCCAGATGAAACTGCATATTTTAGGATGTTGTTAAATAGGGAGAACATTACAAATGCTGCCGTGATGATCCAACCGTCACTAATATCGTACTCATTCAATTCACTGCCTGCACCAGCATTATTAGATGTTGCTTCCATTGCAGCTGATCGTATTCTCCTGCTAGATTCATATTTCAGTGTTGTCGTATTTCATGGGATGACAATAGCTCAGTGGCGTAATATGGGATACCAAAATCAGCCGGAACACCAAGCATTTGCACAGTTATTACAAGCTCCTCATGATGATGCCCAAATTATCATTAACGAACGTTTTCCGGTACCTCGTCTGGTTGTCTGTGATCAGCATGGCTCTCAGGCTAGATTCTTACTGGCAAAGTTGAATCCATCCGCAACATATAACAATGCTCAAGAAATGGCGGCTGGGTCAGATATCATATTTACTGACGATGTCAGCCTTCAAGTTTTCTTTGAGCATCTTCAGAGGTTGGCTGTCCAATCTTGA 2331 45.05 MSEMANADPEGIDGVRMTWNVWPRTKVEASKCVVPLAASIAPIRPHPEIPTLPYAPLRCKSCSAVLNPFSRVDFTAKIWICPFCYQRCHFPPHYAMISETHLPGELYPQYTTVQYAIPQSINPNPAMDSAQQANPSPVFLFLLDTCMIEEELGFVKSALKRAIGLLPDNALVGFVSFGTQVQVHELGFSDMSKVYVFRGTKEVSKEQVLEQLGLAIGGRRVAGAYQKGVQNGFPNSGVTRFLLPASECEYTLNSLLDELQTDQWPVSPGNRASRCTGVALSVAASLLGACLPGTGARIIALVGGPCTEGPGTIVSKDLSDPVRSHKDLDKDAAPYFKKAIKFYESLAKQLVGQGHVLDLFASALDQVGVAEMKVTVEKTGGLVVLAESFGHSVFKDSFKRVFEGGEHSLGLCFNGTLEINCSKDIKIQGIIGPCTSLEKVKGPAIADTVIGEGNTTLWKMCGLDKSTCLTVFFDLSSSDRSSSPGTANPQLYLQFLTSYQDPEGQSMLRVTTVTRRWIDTAVSSEELVQGFDQEAAAVVVARLTSLKMEMEEGFDAIRWLDRSLIRLCSKFGDYRKDDPSSFTLNPSFSLYPQFLFNLRRSQFVQVFNNSPDETAYFRMLLNRENITNAAVMIQPSLISYSFNSLPAPALLDVASIAADRILLLDSYFSVVVFHGMTIAQWRNMGYQNQPEHQAFAQLLQAPHDDAQIIINERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAQEMAAGSDIIFTDDVSLQVFFEHLQRLAVQS 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 763634 771870 + Cp4.1LG08g05660.1 Cpe08g00118 473084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00118 776 Pfam Sec23/Sec24 beta-sandwich domain 413 517 IPR012990 -
Cpe08g00118 776 Pfam Sec23/Sec24 zinc finger 56 94 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Cpe08g00118 776 Pfam Sec23/Sec24 trunk domain 136 402 IPR006896 GO:0006886|GO:0006888|GO:0030127
Cpe08g00118 776 Pfam Sec23/Sec24 helical domain 532 628 IPR006900 GO:0006886|GO:0006888|GO:0030127
Cpe08g00118 776 Pfam Gelsolin repeat 644 732 IPR007123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00118 K14006 SEC23; protein transport protein SEC23 - csv:101209792 1494.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00118 Cpe-Chr8:763634 Cpe09g00617 Cpe-Chr9:4347649 3.69E-34 dispersed
Cpe12g00162 Cpe-Chr12:1049425 Cpe08g00118 Cpe-Chr8:763634 2.80E-56 transposed
Cpe17g00290 Cpe-Chr17:1955687 Cpe08g00118 Cpe-Chr8:763634 0 transposed
Cpe03g01285 Cpe-Chr3:10414816 Cpe08g00118 Cpe-Chr8:763634 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1024 . . . . . . . . Cmo08g00949 . Cma06g01605 . Car06g01364 . Sed02g1076 Cpe08g00118 . Bhi01g01171 Tan10g1175 Cmetu06g0798 . Hepe05g1311 . Lcy11g1275 . . . . . . . Cone14ag0547 Cone15ag0568 Cone18ag0909 Cone11ag0596 . . . Cme06g00863 . Blo07g00065 . Bda13g00305 . . . . . . . Cma08g00981 . Car08g00861 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004546 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00118 Cpe_Chr08 FPKM 10.235968 9.93441 38.859447 36.418079 15.338336 17.261797 15.142678 56.188393 60.929977 56.816456