Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00119 ATGGAGCATCGAGATCAGAGGCAGGAGAGCCATGGAGTTCATGTTTGCAACAAATGTGGATGGCTCTTTTCTAGCTCTCATCCGAGTGCTAAACGTAGGCGTGCTCACAAGAGGGTTTGTGGAACCATTGAAGGGTTCAAGCTGGTTGAGTCTGAGGCTAATACCCTTTTGACTGTTTCAGATAATGATGACTATCATAATAGTTCCAGTCTAGAAGTCCTGGGAGGCAGTTGCAGTGACAATGGCGTCGATGGAACGAAAACAAAATCGAAGGAATCCGGAGATGAAGTGTTTTCCGATGCTGTTGCAGAGTTTTCAGAGGGCATAGGACCAAACAAATCCATGGGAGACGCTTTGAATTCGGAAAGCACGTCGAAGATGGTGGCAGAGGATGAAATGAATAGCTCTCGAGCTACTAATGACACAGAAGTCCTTGAAACTACTATCCATCGGTCAGGAAGCGAGCAGGAACATGAAATTAATCAAGAACTTCTGAATATCGAGACTGACTCTCGAATTCCGTTGTCGTGTTCTTCAACTGAAAATCAAAAGGTTGAGGATTCGATTGTTGCAGAAACCGCTATCGATCGGTCAGGAAATGTGCAGGAAACCAAAGTTGATCAAGAACTTATGAATCTTGTGACTGATTTAGGAACTCCTCTGTTCATCTCTTCAACTGAGCAGGAAAAATTTAATCAAGAACTTATGACTCTTGAAACCAACTTTAGAACTGGGGATTCCGTGGTTCTCCACGATGATCGTATGAATACGACTACTGCAAGTGACTTGAACCCGATTGAACCCGAAACTATAGTGCCTCTGCAACAAGAAAGGAACATTGATAGTGCTGAAAACGTGCCTCGATGCTCCTTGCCATCTCCTGATACAAGATATGATGAAAAGAAGAATGAGGGGTTCGGCTCGTTTAAAAACTCGGCAGAAATTGCTGCACCGCCGGGAAGAATGGATAATGATAAATCCGAGCCAGTATCGAAGATGGAAGAAACCATTGAAATACCTACAGAGCCCACTGCACATAATGGAAACGATCTAGAGTCTTGCAGTTGTCACATCTTACTCGAGACTGATGAAATAAAAGAAAGGAATGACAATGTGCCTCCGCCTTCTGTGTCGAGTGACTTAAACGTTGTAGAGCGTCCTGAGGCTTTAGTCGACGATTCAAAGGACCATAAGGATCTTAAGTTAACTGATTATGTTGTACAGGATCGTCATGAAGGAGTCGGTGGTTCGGGAGACAATTTTAAGGATCCCGTTCGTGAGACTTCCCAGGCCGAGCCATTTGATCCAGCCTCGGAAGTAGCTTCTTTTGACACTGGAGTCAAGAATGTGTCTGTTGATGTGAAAGCTGATTGTTCTAGGAATAGCAACGAGGAAGTCGAAGAAATTCCCGTTAAAGAAGTGAATGCAACCGAGATTAAGAGTGAACTCGGTGAAAACGAGAAGCACGATAAGAGTCAAAACTTAAGTGATGCTGCAAATTTTGGGATTGATAGTGTTCCATCAGCCTCCTTTTCACCAGAAGTTGAACCAATGGCCTCTTCCATGCATTCTCTGGATAATCTTTCTGAAAATGTTACCGATGTCGTTTCCGATGAAAACTCAGCTGCACCAACAGGTAATCTAAAGAAACTCGACGACAATGAAGTTGGAATCAGAGGAGTTCTTCGAGCTGATGATGAGAACAAAGCAGGAGCATGTGGAAGACATTCGGAGGACACGGCGCAAATTTATCTTCCAGAGGAAAAGGTTTCAACAGGGATCGATTCCACGATGCTTGAATCTAACACGAACAGCAGAGAGAATAGATGTCGTGCTGTTGCCGAAGAGATAGCAAACGAATCTCCTAGGAAGTTTTCTGGGACCGAAAACGCAGACACGAAAAGTTTCGGAATTAATTTAGTTTCAGATGCTCAGCAAAGTGTAAAAGACGACAATCATGGCGATGATCAGTCATGTCATGTTGCAGGTTTTAGCGCAGTTCAAAACTCGTCCAATGTCCATTCGAACAAGGAGGCGAATTTGGTTTCTGTCAGTAACGAATCTGTCACGGGAAGATCAGACGCTTCTCGGGATGGCAGTGTGAGCCAGCTTGTTGGAGATGTGAGAATTGCTTCTGAAACTTGGCAAGATGATACTGTGAAAACCGACATAAAACCGCAGCTTACATCATCCCTTCTCGATGCTTCGGTCGATGCGAGTAGTCAAACCGACAGTCTTGAAGGCAACTGGGGGTCTGTCTCAGTGCTCTCAACTCAGTCAGATTTACCAGCTGTTGTTGATGGCGAAGCAACACTGCAAGCACGAGCCGAAGCAGAAGGAAACAACTCGAAGAGGAAGGAAGCTGCAACCAAGAGACAACATTCCGACAGATCTGATTTGTTCGAGCCACCATCTTTTATGACCTTGGTCGAACCTGATGGTAGAGGAATCCAAAGCACAGGCGCTTCCGAAATCCAGACCGACGAAAACCAACAGCAGCCAAATCCTGCATCTCTGCAGGCTGGGTGGTTTCCCTCGTACACTCACATTGCAAAGGACTCACCGGGACGAAAGAAGAACGAGGCAGTTATAGCGAAGGTAACAAACTGGAGCACAGGGAAGCCACACACTGCTCTCAAGAATCTTTTGGATGATGCTGCACTCGAAAACAAACAGAAATCATCACCAACACGAAAAGAAAACCTGGCTTCTATGATTCAGAAAGACGAAAATTCGACAGAAAATAGTGTCGTCAACGCAACAGTCGGCTCCGTTACTCGGCCGAGATCGCCTGCCTCACAATTGGGAAACAGAGAGATTCCAAATGAATGGAACTCTCCTGCAAGGTATCCATCAGACATCCGGAGAGAAAGGAGAAAAGGGAAGCCATATTGGGCTCAATTTGTATGCTGTTCATCAGTGCATTAG 2928 45.08 MEHRDQRQESHGVHVCNKCGWLFSSSHPSAKRRRAHKRVCGTIEGFKLVESEANTLLTVSDNDDYHNSSSLEVLGGSCSDNGVDGTKTKSKESGDEVFSDAVAEFSEGIGPNKSMGDALNSESTSKMVAEDEMNSSRATNDTEVLETTIHRSGSEQEHEINQELLNIETDSRIPLSCSSTENQKVEDSIVAETAIDRSGNVQETKVDQELMNLVTDLGTPLFISSTEQEKFNQELMTLETNFRTGDSVVLHDDRMNTTTASDLNPIEPETIVPLQQERNIDSAENVPRCSLPSPDTRYDEKKNEGFGSFKNSAEIAAPPGRMDNDKSEPVSKMEETIEIPTEPTAHNGNDLESCSCHILLETDEIKERNDNVPPPSVSSDLNVVERPEALVDDSKDHKDLKLTDYVVQDRHEGVGGSGDNFKDPVRETSQAEPFDPASEVASFDTGVKNVSVDVKADCSRNSNEEVEEIPVKEVNATEIKSELGENEKHDKSQNLSDAANFGIDSVPSASFSPEVEPMASSMHSLDNLSENVTDVVSDENSAAPTGNLKKLDDNEVGIRGVLRADDENKAGACGRHSEDTAQIYLPEEKVSTGIDSTMLESNTNSRENRCRAVAEEIANESPRKFSGTENADTKSFGINLVSDAQQSVKDDNHGDDQSCHVAGFSAVQNSSNVHSNKEANLVSVSNESVTGRSDASRDGSVSQLVGDVRIASETWQDDTVKTDIKPQLTSSLLDASVDASSQTDSLEGNWGSVSVLSTQSDLPAVVDGEATLQARAEAEGNNSKRKEAATKRQHSDRSDLFEPPSFMTLVEPDGRGIQSTGASEIQTDENQQQPNPASLQAGWFPSYTHIAKDSPGRKKNEAVIAKVTNWSTGKPHTALKNLLDDAALENKQKSSPTRKENLASMIQKDENSTENSVVNATVGSVTRPRSPASQLGNREIPNEWNSPARYPSDIRRERRKGKPYWAQFVCCSSVH 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 771146 777665 - Cp4.1LG08g05570.1 Cpe08g00119 473085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00119 975 MobiDBLite consensus disorder prediction 285 328 - -
Cpe08g00119 975 MobiDBLite consensus disorder prediction 819 842 - -
Cpe08g00119 975 MobiDBLite consensus disorder prediction 779 799 - -
Cpe08g00119 975 MobiDBLite consensus disorder prediction 897 941 - -
Cpe08g00119 975 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 975 - -
Cpe08g00119 975 MobiDBLite consensus disorder prediction 458 494 - -
Cpe08g00119 975 MobiDBLite consensus disorder prediction 409 442 - -
Cpe08g00119 975 MobiDBLite consensus disorder prediction 457 589 - -
Cpe08g00119 975 MobiDBLite consensus disorder prediction 775 843 - -
Cpe08g00119 975 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 975 - -
Cpe08g00119 975 MobiDBLite consensus disorder prediction 514 544 - -
Cpe08g00119 975 MobiDBLite consensus disorder prediction 890 951 - -
Cpe08g00119 975 MobiDBLite consensus disorder prediction 552 574 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00119 - - - cpep:111800993 1930.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01286 Cpe-Chr3:10426750 Cpe08g00119 Cpe-Chr8:771146 3.77E-146 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g984 . . . . Bpe04g01004 . . . . . Cma06g01743 . Car06g01478 . . Cpe08g00119 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003388 1 1 0 3 0 1 2 1 1 1 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 1 1 11 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00119 Cpe_Chr08 FPKM 12.075636 13.65101 12.451886 12.895056 23.879984 21.236746 23.900751 25.244236 23.958399 25.718653