Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00124 ATGTCTTCAGCCATTGCTCCTTTATCGTTCCTCGGAACTTCCATTCTAGGCGTCTCTTATTCACAGAATCTTCGCATTCCTCCTCATCTCAATTTTCCGTCGACCACTTCAAGTTCCGGCCGACATTCTCTCGTTATCGAAGCCAAGGCTACCACCAGACGGGAGGACCGTGCTGCTCGCCATTCTCGTATCAGGAAGAAGGTTGAAGGAACAACAGAGAGGCCAAGGTTGTCTGTGTTCCGCTCCAACAAGCATCTCTATGTCCAGGTTATCGATGACTCCAAGATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGAAGTAGCAAAGAAAGTGGGGGAAGCTATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCATTTGACCGTGGTGGATATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTGTGACCGGGAAAAACAGAACTGCAAGGGTCTCAGCAATGGCAGGTTCTACTGGTGGTAACGCTTCTTCCAATTCCTCGCCTACTCCTCCTCCACCCAAAATTCTTCTGGCAAAGCCTGGCCTCGTCACCGGTGGAGCAATTTCCTCTAAGATTGGGCGCGGCGCCGGCGCCGATGACGAATCCGCATCAATTCGGTCCCGTCTCCCTTCTCTTGGATCCCTGAATCTTCTCTCCGATTCCTGGGACTTCCACATTGACCGTTTCCTGCCGTTTTTGACTGAGAATACGGAGTTCAAAGTGGTGGGAATAATTGGTCCACCGGGAGTTGGTAAGTCGACGATCATGAATGAGATTTATGGCTTCGATGGAAGTTCTCCAGGTATGCTACCACCATTTCCAATTCTATCTGAAGACGTTAGAGCCATGGCTAGGCATTGCACGTTGGGCATTGAGCCACGAATTTCTTCAGAGAGGATCATTCTTCTGGATACTCAGCCTGTGTTCAGTCCTTCTGTTTTAGCTGAAATTATGAGACCAGATGGTTCATCCACCATCTCAGTTATTAGTGGCGAATCTCTATCTGCTGAATTGGCTCATGAACTTATGAGTATTCAGCTGGGCATTCTTCTAGCGTCCATTTGCAATATTGTCCTTGTGATATCGGAGGGAGCTCACGATCTAAATATGTGGCGTTTGATGTTAACTGTTGACTTGCTTAAACATGGCTTGCCCGATCCATCTTCTTCTGTTTTCTCTCATACACAAAATTCTAATGTAGGATCCGAGAAGGAACACAAAGATAAAGTTTCTGCAAGTGAAGAATATATGGCTACTCCAATCTTTGTTCATGCAAAAGTGGAGGATCCAGATCTTGTTCCACACAACATCTTGCAACTAAAGAGAGCATTTGCACAATGTTTTAAAACCGCCTCATTTATGGGAGACAAGGTCAAAAGTGACAAGGTCCAAAGTGAGCAACTACTTTCCTCTGTGGTTCCAGATACCAGAAATTTAGATGTCGATGGTGAAGATCGAAGGTTGCTTTTCATCCCAAATCGAAACAAGGATGACTCGACAAGAGGCCAATATGAAAGTTTTAACTTAGCTTTGTGGAAGCTGAGGGATCAGGTTCTATCCATGAATGGCACGTCGTTTTCGAGGACTGTTTCAGAACGTGATTGGTTAAAAAACTCAGTGAAGATATGGGAATTGGTGAAGAGCTCTCCCATTGTAATGGAGTATGCTAGAACGCTTCAATCTTCAGATCGATTCGTTTGGTGA 1785 45.71 MSSAIAPLSFLGTSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVTGKNRTARVSAMAGSTGGNASSNSSPTPPPPKILLAKPGLVTGGAISSKIGRGAGADDESASIRSRLPSLGSLNLLSDSWDFHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGFDGSSPGMLPPFPILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTISVISGESLSAELAHELMSIQLGILLASICNIVLVISEGAHDLNMWRLMLTVDLLKHGLPDPSSSVFSHTQNSNVGSEKEHKDKVSASEEYMATPIFVHAKVEDPDLVPHNILQLKRAFAQCFKTASFMGDKVKSDKVQSEQLLSSVVPDTRNLDVDGEDRRLLFIPNRNKDDSTRGQYESFNLALWKLRDQVLSMNGTSFSRTVSERDWLKNSVKIWELVKSSPIVMEYARTLQSSDRFVW 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 813246 822108 - Cp4.1LG08g05470.1 Cpe08g00124 473090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00124 594 CDD Ribosomal_L18_L5e 64 168 - -
Cpe08g00124 594 SUPERFAMILY Translational machinery components 53 168 - -
Cpe08g00124 594 Gene3D - 52 169 - -
Cpe08g00124 594 PANTHER UNCHARACTERIZED 186 590 IPR039177 GO:0000184
Cpe08g00124 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 295 IPR027417 -
Cpe08g00124 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 388 IPR027417 -
Cpe08g00124 594 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 52 168 IPR005484 GO:0003735|GO:0005840|GO:0006412
Cpe08g00124 594 Hamap 50S ribosomal protein L18 [rplR]. 52 170 IPR004389 GO:0003735|GO:0005840|GO:0006412
Cpe08g00124 594 MobiDBLite consensus disorder prediction 50 70 - -
Cpe08g00124 594 TIGRFAM L18_bact: ribosomal protein uL18 54 168 IPR004389 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00124 K18735 SMG9; protein SMG9 - csv:101207679 695.656
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01292 Cpe08g00124 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01469 Cpe-Chr1:8788162 Cpe08g00124 Cpe-Chr8:813246 1.55E-19 transposed
Cpe03g01292 Cpe-Chr3:10519517 Cpe08g00124 Cpe-Chr8:813246 3.31E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g289 . Blo12g00370 Bda03g00839 . Bpe04g00794 . Bma04g00737 . . . . Cma14g01546 Car06g01357 Car14g01364 Sed02g1091 Cpe08g00124 Cpe03g01292 Bhi01g01152 Tan10g1143 Cmetu06g2510 . Hepe05g1329 . Lcy11g1289 . . . . . . . Cone14ag0672 Cone15ag0682 . . Lsi05g01372 . . Cme06g00847 . . . . . . . . . Cmo06g01591 Cmo14g01582 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013037 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00124 Cpe_Chr08 FPKM 13.850021 13.893057 16.760296 15.266891 94.747032 102.882401 98.800621 46.3307 48.593307 43.20507