Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00127 ATGAAATCTTCGGCCTCAGCTAACTCAAAATCTCCTTTCAAGTTCAGGATTCCGACGGCGGAGAATCTAGTGCCAATTCGCTTAGATATCGAAATTGATGGTCAGAGATTCAAAGATGCCTTCACTTGGAACCCTACTGATCCCGATTCAGAGGTGGTGGTCTTTGCAAAGAGGACGGTGAAGGATTTAAAGCTTCCCCCAGCATTTATAACACAAATTGCACAATCCATTCAATCACAACTTACAGAATTCAGATCCTTTGAAGGTCAAGATATGTATACTGGTGAAAAGATTATTACAATCAAGCTTGATCTTCGAGTAAACAATACGCTCATAAGGGATCAGTTTCTGTGGGACTTGAACAACTATGAGAGTGACCCTGAAGAGTTCTCCCGGACATTCTGCAAAGATTTGGGTATTGAAGACCCTGAAGTAGGACCTGCAATTGCTGTTGCGATTCGAGAGCAGCTTTATGAGATAGCCGTGCAGAACGTTGCTTCAGCAAGAGAAAGCAGACTGAGCAAGAAGGGCCGCCGAGGGTTTGAGCATGTTTCAGCAAGTAAAACTGGAGGTGCTTCGGTGGACTTGATGAAGTTATTTGGTCATCGATCAAGTGCTGTTCGGAAAAGAAAGGACTGGGACATCTACGAACCAATTGTCGATCTTCTATCCAACGAGGAAGTAGATGCCCTTGAAGCAAAAGAAGAGAGGGCTGCTCGATAA 723 44.12 MKSSASANSKSPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPTDPDSEVVVFAKRTVKDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIITIKLDLRVNNTLIRDQFLWDLNNYESDPEEFSRTFCKDLGIEDPEVGPAIAVAIREQLYEIAVQNVASARESRLSKKGRRGFEHVSASKTGGASVDLMKLFGHRSSAVRKRKDWDIYEPIVDLLSNEEVDALEAKEERAAR 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 835108 839509 - Cp4.1LG08g05440.1 Cpe08g00127 473093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00127 240 Pfam SNF5 / SMARCB1 / INI1 20 87 IPR006939 GO:0000228|GO:0006338
Cpe08g00127 240 Pfam SNF5 / SMARCB1 / INI1 99 240 IPR006939 GO:0000228|GO:0006338
Cpe08g00127 240 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY B MEMBER 1 5 240 - -
Cpe08g00127 240 PANTHER SNF5 5 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00127 K11648 SMARCB1, SNF5, INI1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 - csv:101206466 450.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01298 Cpe-Chr3:10547991 Cpe08g00127 Cpe-Chr8:835108 2.03E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g281 . . . . . Bpe14g01073 . . . . . . Car06g01353 . Sed02g1098 Cpe08g00127 . Bhi01g01146 Tan10g1134 Cmetu06g2072 . Hepe05g1336 . Lcy11g1296 . . . . . . . . . . . . . . . Blo02g00456 . . . . . Bma02g00959 . . Cmo06g01588 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009198 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00127 Cpe_Chr08 FPKM 0.0 0.0 8.040458 12.618411 5.472834 6.919369 9.845168 1.285995 1.899364 1.844417