Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00130 ATGGAGGTCTCTGGTGCCGTTTCACGGCGACTTCCCGGCCTCATCCGCCGAGAGATTGCTCAATCTTCCATGGAGGTCTCCGGTCATGATGCCCGGCGGGCGCCCTGTAGCCTGTCCATTTCCGGTGGCTCTGTTCGTACTGAAACTCGTGATTTCGGCCTCTACGTTCGTCGGAATATAAATTCTCCTAGGTTTAGCGATGACGGTCATGTGCGGTATTATGTTGGAACGAGGTGCCATGGTGGCAGATTGAAGAAGGAGAAGGAGGCGGTGAAGAAGAAATTGAAATTGCTGAAAGGATTGTCTGGTGATTCATCTGCGGCTTTTGCATTCGGCTTCGTGTTTCGTTTTGATGATAGCTCGGTCGGCGAGTTTCAGGCGGATCGCTTCTCTATTGAGGAAACGAGAGAGGTGTTGGAAAGACAGCTTCAACAGCTAAAAGCAGAGGAGAAGGAACAGAAGAGAAAAAGGAAGCTAGAAAAGGCCAAGCTGAAAGCAGCTCGATTACAAACCGCTCACGATTCATCATCTTCATCCTCCGAATCCAGTGCCATTGAAGGCAATATGACCAACACAAGGTACCGAACAAGGAAGGCAAATTCACCCTCACTTTCGCAGCCATTCTCAGATCAATGGCAGGCAAATGCCATTCAAGGATCAGCATTAGCTCCTCCATTGCAGACCCATCAGCTCAATTCAAACACCGGAAACTTCGGTGTTGCTCGGTCGGCATCTGTAGGGAGGGTTGAAGTGTGTATGGGAAACAAGTGCAAGAAAGCAGGGGCAGCGGCATTGATGGAGGAATTCGAGAGGGTGATGGGGGCAGATAGTGTTGTTTGTGGGTGTAAATGCATGGGAAGATGCAGAGATGGACCAAATGTGAGAGTTTCTAGTTCTTTGGACATGGAAACTCGCTCTCCAAATCCACTGTGCATTGGAGTTGGAGTGGAGGATGTTGGTAGAATTGTGGCTGAGCATCTAGGAGGACAAGGGGAGCATAAACAACCTAGGTTTGCACCTTCAATTTGA 1029 49.37 MEVSGAVSRRLPGLIRREIAQSSMEVSGHDARRAPCSLSISGGSVRTETRDFGLYVRRNINSPRFSDDGHVRYYVGTRCHGGRLKKEKEAVKKKLKLLKGLSGDSSAAFAFGFVFRFDDSSVGEFQADRFSIEETREVLERQLQQLKAEEKEQKRKRKLEKAKLKAARLQTAHDSSSSSSESSAIEGNMTNTRYRTRKANSPSLSQPFSDQWQANAIQGSALAPPLQTHQLNSNTGNFGVARSASVGRVEVCMGNKCKKAGAAALMEEFERVMGADSVVCGCKCMGRCRDGPNVRVSSSLDMETRSPNPLCIGVGVEDVGRIVAEHLGGQGEHKQPRFAPSI 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 851995 854625 + Cp4.1LG08g05490.1 Cpe08g00130 473096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00130 342 MobiDBLite consensus disorder prediction 151 192 - -
Cpe08g00130 342 MobiDBLite consensus disorder prediction 170 192 - -
Cpe08g00130 342 CDD TRX_Fd_family 248 326 - -
Cpe08g00130 342 Gene3D Glutaredoxin 247 337 - -
Cpe08g00130 342 Coils Coil 129 163 - -
Cpe08g00130 342 SUPERFAMILY Thioredoxin-like 249 337 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00130 K22849 DGAT3; diacylglycerol O-acyltransferase 3, plant [EC:2.3.1.20] - csv:101205287 336.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01302 Cpe-Chr3:10562775 Cpe08g00130 Cpe-Chr8:851995 1.93E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g270 . . . . . Bpe14g01075 . . . . . . . . . Cpe08g00130 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma02g00956 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008184 2 1 2 1 1 1 2 1 1 0 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00130 Cpe_Chr08 FPKM 46.339901 46.006584 63.859512 60.883045 46.612995 43.016747 45.516541 91.256561 99.206543 96.200867