Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00131 ATGGAATTTGGAGATGAAGATGATGACTGGAACTTGACACTTGAAGAACTCGATTCCCTCGAGAGAGATGCTGTTCAGAAGATCGCTCAACTTCATTCCGCTGCTGCTTCTGCTTCTTCTTCTTCAGTAAACGTCTCTATTCCTTGCTCTGCTTATAATCAATACTCTCATCAGTTCGTTCAATCAAATGAGGCCAAAATCTGCAACCTAAAACCTCAAAACCCTGCATTTCAATCTCCCCAACTCAATCCTGCACGGGGTTCTCATTCGCGCGGGGTGGAAACCCTTCCTCCCTTGGCCGGAGTATTACCTTCATCCGCTACGTCAAAAGAGCACATTGGAGATGAAGGTGCAAAGGAACTACCTAAGCTTTCTGTCAAATTTTTTCTTCACAGCAGCGGGAACATTGCTGCAAAATTTTCATACGATCAGGTACTGGTAGAAGCTTTTCGAAAAATCCCTAAAGCCACTTGGAACGCAAAAGAAAGATTATGGATGTTTCCAATATCTAGTATGTCAGCGGCAGAAAATGTTTTACGCGACGTAGTTGGTTCTAAAGTTGAGGTAGAGAAGTTAGATAGCTTGGTGCATCGTGCTATCATAGCAGCTTCTCTGCTTCCTGATCTACGAGACAAATATAACAGGTTACCTGCGGATATCGAATCAAAGCTTTTACCCTTTCAGCGGGAAGGTGTTGGGTTTATCTTACAGCATGGAGGTCGTGCTCTTTTGGCAGATGAAATGGGGCTAGGGAAGACTTTGCAGGCAAATGACTCTTTAACTGAGCTTTGTAATCGTTATGTTGCTATTGCTGTGGCTGCATGTATTCGCGAATCATGGCCCGTTCTTATACTCGCACCATCTTCCTTACGCTTGCACTGGGCTGCTATGATTCAGCAATGGCTCAAAATTCCTTCATCAGATATTCATGTTGTTTTGTCCCAAAATTGCGGGTCAAATAAGAGTGGATTTACTATCCTCTCCTCAAGCACAAAAAGCACCATTCATCTTGATGGCCTTTTCAACATCATCTCCTATGATGCGGTCCAGAAGTTACAGAATATTCTAATGGCCTCGGAGTTTAAGGTTGTTATTGCAGATGAGTCACACTACATGAAAAATGCTCAAGCAAAGAGGACGGTCGCTTGTTTGCCCATTATACAGAAAGCTCAGTATGCTATTTTGCTTAGTGGAACTCCAGCATTGTCTCGACCTATTGAACTCCTCAAGCAGTTGGAAGCATTATATCCAAATGTGTATAAAAGTGTTCATGAGTATGGCAACAGATATTGCAAGGGTGGAACTTTTGGATTATATCAAGGTGCAAGTAACCATGAAGAATTACACAATCTGATGAAAGCAACCTTGATGATCCGTAGGCTTAAAAAGGAAGTTCTTTCTGAGCTCCCTCTGAAGCGTAGGCAACAGGTGTTCCTTGATTTGGCTGAGAAGGACATAAGGGGAATTAAAGCTTTATTTTGTGAGTTGGAGGTTATTAAAGGAAAAATTAAGGCCTGCAGATCAGAAGAGGAGGTAGAATCACTGAAGTTTCAACAAAAGAATCTTATTAATAAGATATACACTGATTCTGCTGAAGCCAAGATTCCAGCAGTTCTTAATTATTTAGAGACTGTGGTTGAGGGAGGTTGCAAGTTTCTGGTCTTTGCTCATCATCAGCCCATGATTGTTGCTATACACCAGTTCTTTCAAAAAAAGAAAGTGAACTGCATTCGAATTGACGGCGGTACTCCGTCAGCAACACGGCAAGCTCTGGTTGCAGACTTTCAGCAGAAAGATTCTATCAGGGCAGCAGTGTTATCTATCAGAGCTGCAGGTGTTGGGTTAACGTTAACCGCTGCCAGCACGGTTATCTTTGCCGAGCTTTCTTGGACCCCGGGTGATCTGATTCAAGCTGAAGATCGCGCTCATAGAATTGGACAAGTGTCTTCTGTTAACATACATTATCTACTGGCGAACGACACAGTCGATGATATCATATGGGATGTTGTTCAGAGCAAGTTAGAAAATTTAGGACAGATGCTGGATGGGGAAGAGAACACATTGGAAGTGGCAGTGAAGCAGCAGCCAACTTCAAGCAGCAGTCCAAATTCAAAGCAAAAGACATTAGACTCTTTCATTAAGCGCTGCAACAATGTAAGTGCTGATACTCAATCCAAGTTGAAACTTCCCAGGCATTAA 2199 42.66 MEFGDEDDDWNLTLEELDSLERDAVQKIAQLHSAAASASSSSVNVSIPCSAYNQYSHQFVQSNEAKICNLKPQNPAFQSPQLNPARGSHSRGVETLPPLAGVLPSSATSKEHIGDEGAKELPKLSVKFFLHSSGNIAAKFSYDQVLVEAFRKIPKATWNAKERLWMFPISSMSAAENVLRDVVGSKVEVEKLDSLVHRAIIAASLLPDLRDKYNRLPADIESKLLPFQREGVGFILQHGGRALLADEMGLGKTLQANDSLTELCNRYVAIAVAACIRESWPVLILAPSSLRLHWAAMIQQWLKIPSSDIHVVLSQNCGSNKSGFTILSSSTKSTIHLDGLFNIISYDAVQKLQNILMASEFKVVIADESHYMKNAQAKRTVACLPIIQKAQYAILLSGTPALSRPIELLKQLEALYPNVYKSVHEYGNRYCKGGTFGLYQGASNHEELHNLMKATLMIRRLKKEVLSELPLKRRQQVFLDLAEKDIRGIKALFCELEVIKGKIKACRSEEEVESLKFQQKNLINKIYTDSAEAKIPAVLNYLETVVEGGCKFLVFAHHQPMIVAIHQFFQKKKVNCIRIDGGTPSATRQALVADFQQKDSIRAAVLSIRAAGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPTSSSSPNSKQKTLDSFIKRCNNVSADTQSKLKLPRH 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 852899 862112 - Cp4.1LG08g05450.1 Cpe08g00131 473097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00131 732 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 6 722 IPR030101 GO:0006281|GO:0031297|GO:0036310
Cpe08g00131 732 ProSiteProfiles HARP domain profile. 120 193 IPR010003 -
Cpe08g00131 732 CDD DEXHc_HARP_SMARCAL1 224 460 - -
Cpe08g00131 732 CDD SF2_C_SNF 533 657 - -
Cpe08g00131 732 Pfam Helicase conserved C-terminal domain 535 646 IPR001650 -
Cpe08g00131 732 Pfam SNF2-related domain 242 491 IPR000330 GO:0005524|GO:0140658
Cpe08g00131 732 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 6 722 - -
Cpe08g00131 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 689 IPR027417 -
Cpe08g00131 732 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 537 689 IPR001650 -
Cpe08g00131 732 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 233 418 IPR014001 -
Cpe08g00131 732 Gene3D - 203 461 IPR038718 -
Cpe08g00131 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 460 IPR027417 -
Cpe08g00131 732 Gene3D - 462 727 IPR027417 -
Cpe08g00131 732 SMART ultradead3 220 437 IPR014001 -
Cpe08g00131 732 Coils Coil 674 694 - -
Cpe08g00131 732 SMART helicmild6 563 646 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00131 K14440 SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-] - csv:101214093 1213.75
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe08g00131 Cpe17g00093 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00131 Cpe-Chr8:852899 Cpe18g00774 Cpe-Chr18:7351938 4.28E-57 dispersed
Cpe08g00131 Cpe-Chr8:852899 Cpe19g01203 Cpe-Chr19:8078742 2.70E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g271 . . . . . . . . . . . . . . . Cpe08g00131 . . . . . . . . . . . . . . . . . . . . Csa06g01540 . . . . . . . . . . . . . . . . . . Cpe17g00093 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006351 1 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 3 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49820 PF00176 SNF2_N 1.30E-26 CL0023 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00131 Cpe_Chr08 FPKM 6.395648 6.568134 4.968207 6.644214 10.112273 8.846917 11.504771 8.424726 8.606065 8.846123