Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00136 ATGCCAGGCCTTACCATCGGCGATACAGTGCCCAACATTCAAGCTGATAGCACCCATGGGAAGATCAGTTTATATGACTACATCGACGGCAGCTGGGCCATCATCTTCTCTCACCCAGGTGATTTCACTCCAGTTTGTACTACGGAGCTGGGGATGATGGCTGCTCAGGCAGAGGAGTTTGCTCGACGAGGTGTGAAGCTCATAGGATTGTCTTGTGATGATGTTCAATCTCATACCGATTGGATTAAGGATATTGAAGCCTACAACAAAGGAAAGAAGGTGACATATCCAATACTGGCGGATCCAAAGGGGGAGTTGATCAAGGAACTGAACATGGTGGACCCGGACGAGAAGGACTCATCAGGCAGGGCAGTGCCATCGAGAGCATTGCACATCATCGGTCCAGACAAGAAGGTGAAGCTGAGCTTCCTGTACCCAGCAAGTACAGGGAGGAACATGGATGAAGTGGTGAGGAAAGGAAAGAAGGTGACATATCCAATACTGGCGGATCCAAAGGGGGAGTTGATCAAGGAACTGAACATGGTGGACCCGGACGAGAAGGACTCATCAGGCAGGGCAGTGCCATCGAGAGCATTGCACATCATCGGTCCAGACAAGAAGGTGAAGCTGAGCTTCCTGTACCCAGCAAGTACAGGGAGGAACATGGATGAAGTGGTGAGGGTTTTGGAGTCATTGCAGAAGGCTGCGAAGCACAAGGTTTGCACTCCGGTTAACTGGAAGCCAGGCGAGGCCTGCGTGATTCCGCCCAATGTAACTAATGATCAGGCCAAGCAAATGTTCCCTCAAGGCTTTGAAACTGTTGATCTTCCTTCCAAGAAGGGATACTTGCGTTTTGCTGCTGTCTAA 867 50.4 MPGLTIGDTVPNIQADSTHGKISLYDYIDGSWAIIFSHPGDFTPVCTTELGMMAAQAEEFARRGVKLIGLSCDDVQSHTDWIKDIEAYNKGKKVTYPILADPKGELIKELNMVDPDEKDSSGRAVPSRALHIIGPDKKVKLSFLYPASTGRNMDEVVRKGKKVTYPILADPKGELIKELNMVDPDEKDSSGRAVPSRALHIIGPDKKVKLSFLYPASTGRNMDEVVRVLESLQKAAKHKVCTPVNWKPGEACVIPPNVTNDQAKQMFPQGFETVDLPSKKGYLRFAAV 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 877859 881125 - Cp4.1LG08g05410.1 Cpe08g00136 473102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00136 288 PANTHER MCG48959-RELATED 1 158 - -
Cpe08g00136 288 PANTHER MCG48959-RELATED 159 286 - -
Cpe08g00136 288 SUPERFAMILY Thioredoxin-like 161 285 IPR036249 -
Cpe08g00136 288 SUPERFAMILY Thioredoxin-like 4 158 IPR036249 -
Cpe08g00136 288 CDD PRX_1cys 6 286 IPR045020 GO:0051920|GO:0098869
Cpe08g00136 288 Pfam C-terminal domain of 1-Cys peroxiredoxin 231 270 IPR019479 GO:0051920
Cpe08g00136 288 Gene3D Glutaredoxin 3 151 - -
Cpe08g00136 288 Gene3D Glutaredoxin 152 220 - -
Cpe08g00136 288 PANTHER MCG48959-RELATED 159 286 - -
Cpe08g00136 288 PANTHER MCG48959-RELATED 1 158 - -
Cpe08g00136 288 Pfam AhpC/TSA family 6 140 IPR000866 GO:0016209|GO:0016491
Cpe08g00136 288 ProSiteProfiles Thioredoxin domain profile. 4 234 IPR013766 -
Cpe08g00136 288 Gene3D Antioxidant, Horf6; Chain A, domain2 221 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00136 K11188 PRDX6; peroxiredoxin 6 [EC:1.11.1.7 1.11.1.27 3.1.1.-] - csv:101203261 291.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00136 Cpe-Chr8:877859 Cpe08g00981 Cpe-Chr8:7663254 1.44E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g3 . . Bda03g01197 . Bpe04g01126 . . . . . Cma06g01582 . . . Sed02g0487 Cpe08g00136 . Bhi01g01119 Tan10g1105 Cmetu06g2035 . . . . . . . . . . . Cone14ag0686 . . . Lsi05g01396 . . Cme06g00822 . . . . . . . . . Cmo06g01578 . . . . . . . . . . . . . . Cla05g00729 Cam05g0798 Cec05g0805 Cco05g0807 Clacu05g0787 Cmu05g0750 Cre05g0826 . Csa03g01545 Chy06g00781 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014291 1 1 0 1 1 1 0 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 1 1 0 1 1 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00136 Cpe_Chr08 FPKM 78.243866 69.686607 62.499405 54.575592 31.868841 35.778221 37.556355 49.500675 52.21468 59.207634