Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00137 ATGGAAACTGGGGAGTCTGCTCCCCCTTCCCTTGGTCCTCGCTATGCACCGGACGACCCTACTCTTCCCAAACCTTGGAAGGGATTGATTGATGGGAGCACTGGACTGTTGTACTACTGGAACCCTGAAACCAACGTTACTCAGTATGAAAAACCGGTCTCTTTGCCACCACCATTACCACTCGCTCCTCATCCTAGTGCCTCTACTTCCAAGCCTACTTCAATCCCGGAGGGTCATTCAATGCCATCAAATGGCACATTAACCCCTCATGTACAGCAAAGTCATCATGTCCCTCAACAGGAAGGCCAATCAAACAGCCAGCTTTCTCAACAACCTGGACATCTGATGTCACAACAGCACAGTTCTGTTGCAGGTCAGGCAATTGTTAATCACCATCCTAGCATGCAAATGGCACCAGATGGGCGACAACATAGCGTGCAACCGAACCAGGTTTTGCAGCAACAGGGGATGTTTCCGATGTCGTCGCAGCATATTGGCCAGCAGCAGGTCATGCATCAAGGTCAGAAAATGGCACATGCCAACCAACAAATATCTCAGCATCCTAACCAGCAACCCCTGCAGAATCCAGGACAACAAATACCACAGCCCTCAATCCAGCATTTAGGACAGCCAAACATGCAAAATCAAACCCCATTAGTTGGCCAGCCTCAAGGTCCGCAATATGGTCAGCAGCAGCCTCAGTATATTGGTTACCAGCAAAGCGTACATCCAAGTGTGCAGCAAAATCCCCAGCAGCAAGTTCAACAGAGCCCTTTAGGACAACCATTTGGTAATCACCTTGAGCAGAAGTCAGCTTTTCAGAAGAGAGAGGAGGACAATATCGAGTCAGGAAACCAAATTGGATTTTCTACTTCCCAGTTTCAACAAAGTGGTGGTACGTCATCTATTCATAGTGTTCATCCTGGAACCAATTCTTCTCAAATGCAACAATACGGTTTACCTTCCGATCAAGCACGACAATTTGGTGGTTCTCCAGGAAACATGCAACAGCCGCATCCTGTGGTTCAATTGCAGCATTCAGGTACTGAATTGACTCATCGCCAACATCATTCTAGATTCCAAGATCCAATGGGCCCAGCTGCGATGCAGGAGAAGCAAGCTGGTTCTGAAAATTTGCCAGGCAGAGCTGGAAATGAATATTTCTTTGGCAGGAATGAGGGGCCTGGAATTGGTCCACATCAACCAAGGCTTGCAGCAATACCAATGGCAAGGAGCCAGCAGGATACAAGGATGAGTGGTGTCCCATTTCCAAGTGTGGCACCCGGTCATCCTAGTGGAACAAGTTTTGCAGCCGGGCAATCACATAATATGTACAACCATGGGTCTGGTGGTCCATCATTGTCAAACAATGCTTTGATGGGCCCTCCCCATATTGGAGCTTCAGATGTTACTAATATGTCACCTGTTGAAGTTTATCGTCAACAGCATGAAGTAACTGCCACGATATATTCTGCTGGTTTCTCATCTCCCACGCCAATTCAAGCACAAACATGGCCGATTGCCCTGCAAGGTAGAGACATAGTCGCAATTGCTAAAACAGGGTCTGGCAAAACTTTGGGCTATTTGATTCCTGCTTTCGTTCTTCTAAGGCAGTGCCGAAATAACCCTCAAAATGGACCAACGGTGTTGGTTTTGGCTCCTACTAGGGAGCTTGCTACTCAAATACAAGATGAGGCAATTAAATTTGGGAGGGCTTCCAGGATTTGTTGTACGTGCTTGTATGGTGGTGCTCCAAAAGGTCCTCAGCTTAAAGAGTTAGATCGTGGGGCTGATATTGTTGTGGCAACTCCTGGCCGACTTAATGATATACTAGAAATGAAAATGATCAATTTTAGGCAAGTTTCACTTCTTGTGCTTGATGAAGCTGATCGGATGCTTGACATGGGATTTGAACCCCAAATTAGAAAGATTGTGAATGAAATACCACCACGCAGACAAACTCTTATGTATACAGCGACCTGGCCCAAGGAAGTGAATATTGGAAGTGTTGATGAACTTGCCGCTAACAAGGCTATCACACAGAGCTTTGTTGGTGAATTAATGGAAAAACAGAGACGGTTGGAGCAGATCCTCAGGTCCCAGGAACGGGGGTCTAAGGTTATAATTTTTTGTTCCACTAAGAGATTGTGTGATCAGCTTGCACGGAATCTTGGGCGTGGGTTTGGGGCTGCTGCAATTCATGGAGACAAATCACAAGGAGAGCGTGATTGGGTATTGAACCAGTTTCGTAGCGGAAAGTCCCCGATACTAGTTGCCACAGATGTTGCTGCCCGCGGGCTTGACATCAAAGATATAAGAGTGGTGATCAACTTTGATTTTCCAACTGGAATTGAGGACTATGTCCACCGAATTGGAAGAACTGGGAGGGCTGGAGCAACGGGAATGGCATATACCTTCTTTTGTGAACAGGATTGGAAATATGCTGCTGATTTGATTAAAGTACTGGAGGGTGCGGATCAGCTTGTGCCTCCTGAGTTGCGAGATATGGCTATGCGTGGGGGGCCGAGTTTTGGCAAGGATAGGGGCGGTTTGGGTCGTTTCGATGCAGCTATGGGTGGCAGCCGCTGGGATTCTGGAGGCCGAGGTGGCATGAGAGATGGTGGGTTTGGTGGTCGTGGTGGTGCAAGAGATGGTGGGTTTGGTGGCCGCGGTGGAATGAGAGATGGCGGATTTGGTGGCCGTGGTGGAATGAGAGATGGTCTTGCTGGTGGACGAGGTGGGAGAGGTGATTTCTTTTCTGGACGAGGTAGAGGAGGACGGGCCTTTGGTGGCCCTCCTGGAGGTCATGTTGGTTGGGGCAGGGGTGATCGTGGTGGCCCACAGGATAGGTACAATAGTGTGGATGGACGTGGGCGTGGACGTGGACAGGATGGGAGGCAGCTTCCTCCAGCAGACAGTAACAACATCGAACCGGGGAACCCAGAAAATGGTGCAGATACGAACGATCAAATTGTAAACACCGCAGCTCAAGGGGAAATTTCCGCAATGGGTTCTATGAAACAT 3024 48.48 METGESAPPSLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPVSLPPPLPLAPHPSASTSKPTSIPEGHSMPSNGTLTPHVQQSHHVPQQEGQSNSQLSQQPGHLMSQQHSSVAGQAIVNHHPSMQMAPDGRQHSVQPNQVLQQQGMFPMSSQHIGQQQVMHQGQKMAHANQQISQHPNQQPLQNPGQQIPQPSIQHLGQPNMQNQTPLVGQPQGPQYGQQQPQYIGYQQSVHPSVQQNPQQQVQQSPLGQPFGNHLEQKSAFQKREEDNIESGNQIGFSTSQFQQSGGTSSIHSVHPGTNSSQMQQYGLPSDQARQFGGSPGNMQQPHPVVQLQHSGTELTHRQHHSRFQDPMGPAAMQEKQAGSENLPGRAGNEYFFGRNEGPGIGPHQPRLAAIPMARSQQDTRMSGVPFPSVAPGHPSGTSFAAGQSHNMYNHGSGGPSLSNNALMGPPHIGASDVTNMSPVEVYRQQHEVTATIYSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFVLLRQCRNNPQNGPTVLVLAPTRELATQIQDEAIKFGRASRICCTCLYGGAPKGPQLKELDRGADIVVATPGRLNDILEMKMINFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVNIGSVDELAANKAITQSFVGELMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARNLGRGFGAAAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINFDFPTGIEDYVHRIGRTGRAGATGMAYTFFCEQDWKYAADLIKVLEGADQLVPPELRDMAMRGGPSFGKDRGGLGRFDAAMGGSRWDSGGRGGMRDGGFGGRGGARDGGFGGRGGMRDGGFGGRGGMRDGLAGGRGGRGDFFSGRGRGGRAFGGPPGGHVGWGRGDRGGPQDRYNSVDGRGRGRGQDGRQLPPADSNNIEPGNPENGADTNDQIVNTAAQGEISAMGSMKH 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 882415 888857 + Cp4.1LG08g05560.1 Cpe08g00137 473103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00137 1008 SMART ultradead3 493 697 IPR014001 -
Cpe08g00137 1008 MobiDBLite consensus disorder prediction 1 28 - -
Cpe08g00137 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 545 815 IPR027417 -
Cpe08g00137 1008 MobiDBLite consensus disorder prediction 948 962 - -
Cpe08g00137 1008 Gene3D - 16 54 - -
Cpe08g00137 1008 MobiDBLite consensus disorder prediction 289 340 - -
Cpe08g00137 1008 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 693 837 IPR001650 -
Cpe08g00137 1008 SMART ww_5 21 54 IPR001202 GO:0005515
Cpe08g00137 1008 CDD SF2_C_DEAD 679 807 - -
Cpe08g00137 1008 Pfam Helicase conserved C-terminal domain 690 798 IPR001650 -
Cpe08g00137 1008 Gene3D - 467 672 IPR027417 -
Cpe08g00137 1008 SUPERFAMILY WW domain 17 53 IPR036020 GO:0005515
Cpe08g00137 1008 SMART helicmild6 714 798 IPR001650 -
Cpe08g00137 1008 Gene3D - 673 840 IPR027417 -
Cpe08g00137 1008 MobiDBLite consensus disorder prediction 49 122 - -
Cpe08g00137 1008 Pfam WW domain 22 52 IPR001202 GO:0005515
Cpe08g00137 1008 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Cpe08g00137 1008 MobiDBLite consensus disorder prediction 968 1000 - -
Cpe08g00137 1008 MobiDBLite consensus disorder prediction 160 265 - -
Cpe08g00137 1008 MobiDBLite consensus disorder prediction 862 1008 - -
Cpe08g00137 1008 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 299 930 - -
Cpe08g00137 1008 Pfam DEAD/DEAH box helicase 498 665 IPR011545 GO:0003676|GO:0005524
Cpe08g00137 1008 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Cpe08g00137 1008 MobiDBLite consensus disorder prediction 66 122 - -
Cpe08g00137 1008 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 625 633 IPR000629 -
Cpe08g00137 1008 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 505 679 IPR014001 -
Cpe08g00137 1008 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 299 930 - -
Cpe08g00137 1008 CDD WW 23 51 IPR001202 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00137 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - csv:101206347 1415.98
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01312 Cpe08g00137 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00541 Cpe-Chr4:5852039 Cpe08g00137 Cpe-Chr8:882415 7.90E-17 dispersed
Cpe05g00150 Cpe-Chr5:782971 Cpe08g00137 Cpe-Chr8:882415 4.95E-95 dispersed
Cpe08g00137 Cpe-Chr8:882415 Cpe15g00182 Cpe-Chr15:1486857 2.40E-94 dispersed
Cpe09g00572 Cpe-Chr9:3951925 Cpe08g00137 Cpe-Chr8:882415 6.90E-15 transposed
Cpe03g01312 Cpe-Chr3:10621417 Cpe08g00137 Cpe-Chr8:882415 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g228 . . . . . . . . . . . Cma14g01570 . Car14g01384 . Cpe08g00137 Cpe03g01312 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo14g01604 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003909 1 2 1 1 1 1 2 1 2 1 2 2 2 1 2 2 1 2 2 2 1 2 1 1 2 1 1 2 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00137 Cpe_Chr08 FPKM 2.319825 2.7905 3.321863 2.03551 23.284008 20.731327 22.765179 0.0 0.0 0.0