Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00138 ATGAAGAGGTGGTATGGAGGAACATTGATACTGGCACTTGCCACAATCTTGGCTTTGCGTTATGGCCTTATGAATATCCAGCCTAAAAAGCAATCGGCATATGATTTTTTCAGAAATCATCCGACCGAAGATTCTCATAGTAAAAACAGTGACTCTTTGGAAGCTGAAGTAGTAAAAACATCAGAGCGGCCTCATCTTATTCATATTGAAGGACTTCGTTATCTAATTGCTCCGGATAATATTACTAAGCGAGCGTCAGAGGCCTTACTTCTGTGGTCTCATATGCACCCCCTGCTGATGAGGTCTGATGCTTTACCTGAAACAGTACAAGGGGTTAAAGAGGCTTCCATAGCATGGAATGATTTATTGTCAGCTATTAAGGCAGAAAAGACCATTAAAGTTGGCAATACCAACAACTCAAAGGCTGAAATATGCCCTTCCTCTGTTACCTCACCTGACAAAATTGCACCAACTGGGGGAATCGTTCTTGAGATCCCTTGTGGTTTAGTTGAGGATTCTTCTATAACCCTGGTTGGCATACCTAATGGACAGCAAGGGGGCTTTCAGATTGAACTGTTAGGCTCTCAGGCTTCCGAAGAGCCAAATCGCCCTATTATCTTGCATTACAATGTCAGTTTGCCTGGTGATAATATGTCTGAGGAATCATTTATAGTTCAAAATACATGGACTGATGAACTTAAGTGGGGCAAAGAAGAGAGATGTCCTACTCATCTGTCAGCAAGCTCTCATCAAGTTGATGGACTTGTTCTTTGTAATGAGCGTGTTCTCCGAAGCACCGGAGCAGAAAATATCAGCATGCATCATAATAATGATGATACCCTAACTAATGTTTCCAGAGGGCAATCTCATGAAAGTACCAACTTTCCATTCATAGAGGGGAATTTGTTCACTGCAACATTGTGGATTGGTTTGGAAGGATTCCATATGAATGTCAATGGACGACATGAAACCTCATTTGAATATAGGGAGAAACTTGAACCGTGGACAGTCAATCAAGTCAAGGTAACAGGTGGTCTGGATCTTCTCTCTTCCTTTGCTAAAGGCTTACCAGTCTTTGAAGATCATGATTTTATTAACTCTTCCCACCTTGGAGCTCCTCCTATTCCGAAGAAAAGACTTCTGATGCTGGTCGGGGTTTTTTCTACTGGAAATAATTTTAAGCGTCGTATGGCATTGAGAAGGACTTGGATGCAATACAAGATCGTACGTAGTGGTGATGTAGCGGTCCGATTTTTCATAGGCTTTGACAAGAATGCACAAGTAAATTGGGAGCTCTGGAGAGAAGTGGAAGCTTATGGTGATATTCAGTTGATGCCTTTTGTTGATTATTACAGTCTGATCACTTTGAAAACAATTGCAATTTGCATTTATGGGACCAAGATCCTTCCTGCAAAATATATCATGAAGACAGATGATGATGCGTTTGTTAGAATTGATGAAGTTCTTTCTGGACTAAAGAGCAGGCCAGCTTCTGGCCTTCTGTATGGTCTTATTTCCTTTGATTCATCACCCGATAGAGATAAAGACAGCAAGTGGCATATTAGTATGGAGCTTTTTAAGCTGGAAGATGTTGCAATGGGCATATGGATTGAGCAATTCAGCAAGGGTGGCAAGGAGGTACAGTACATAAATGAAGAAAGGTTTTACAACTCCGGCTGTGAAGCCAATTACATTCTTGCTCATTACCAAAGCCCAAGATTGATTTTCTTCATCCTCCGGACCTCTCTTCCCATTTCCCTTTCTCCTCTGCGAAACGCGCCACAAGGCCACCAGGAGGAACCATCGGAGAAAGTGAGTGTGAAAAGTGTGGAAATGCCATCCCTACAGACTGCTCTACCTCCTGAACTTGCGAATAATGTCATTAGGCTTTACCGTGAGTGCCTTCGAAGAGCCAAGTATATCGGTCATCGGCAACATAACACCGATCTTGTTGTTAGTATGGTGAAGCAACAATTCAGAAAAAACATGCATGAGACTGATCCAGAGAAGATTCAGAAGTTGAAAGATGATGCGGCAAGGGGACTCATAAACCATATTCTATACGAATCCGAGAGACTGACAGGTCGAAAACTCAGCCAAAGTTCTTGA 2109 42.15 MKRWYGGTLILALATILALRYGLMNIQPKKQSAYDFFRNHPTEDSHSKNSDSLEAEVVKTSERPHLIHIEGLRYLIAPDNITKRASEALLLWSHMHPLLMRSDALPETVQGVKEASIAWNDLLSAIKAEKTIKVGNTNNSKAEICPSSVTSPDKIAPTGGIVLEIPCGLVEDSSITLVGIPNGQQGGFQIELLGSQASEEPNRPIILHYNVSLPGDNMSEESFIVQNTWTDELKWGKEERCPTHLSASSHQVDGLVLCNERVLRSTGAENISMHHNNDDTLTNVSRGQSHESTNFPFIEGNLFTATLWIGLEGFHMNVNGRHETSFEYREKLEPWTVNQVKVTGGLDLLSSFAKGLPVFEDHDFINSSHLGAPPIPKKRLLMLVGVFSTGNNFKRRMALRRTWMQYKIVRSGDVAVRFFIGFDKNAQVNWELWREVEAYGDIQLMPFVDYYSLITLKTIAICIYGTKILPAKYIMKTDDDAFVRIDEVLSGLKSRPASGLLYGLISFDSSPDRDKDSKWHISMELFKLEDVAMGIWIEQFSKGGKEVQYINEERFYNSGCEANYILAHYQSPRLIFFILRTSLPISLSPLRNAPQGHQEEPSEKVSVKSVEMPSLQTALPPELANNVIRLYRECLRRAKYIGHRQHNTDLVVSMVKQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLTGRKLSQSS 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 889073 897067 - Cp4.1LG08g05320.1 Cpe08g00138 473104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00138 702 CDD GLECT 162 352 IPR001079 GO:0030246
Cpe08g00138 702 SUPERFAMILY Concanavalin A-like lectins/glucanases 162 350 IPR013320 -
Cpe08g00138 702 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE GALT1 75 526 - -
Cpe08g00138 702 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 75 526 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cpe08g00138 702 CDD Complex1_LYR_SF 627 684 - -
Cpe08g00138 702 Pfam Complex 1 protein (LYR family) 627 678 IPR008011 -
Cpe08g00138 702 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 161 355 IPR001079 GO:0030246
Cpe08g00138 702 Pfam Galactosyltransferase 394 528 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cpe08g00138 702 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 525 574 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cpe08g00138 702 Pfam Galactoside-binding lectin 162 350 IPR001079 GO:0030246
Cpe08g00138 702 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE GALT1 525 574 - -
Cpe08g00138 702 Gene3D - 155 352 - -
Cpe08g00138 702 SMART Gal_bind_lectin_2 165 353 IPR001079 GO:0030246
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00138 K20843 GALT2S; hydroxyproline O-galactosyltransferase 2/3/4/5/6 [EC:2.4.1.-] - csv:101223060 978.008
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01468 Cpe-Chr1:8784152 Cpe08g00138 Cpe-Chr8:889073 1.66E-154 dispersed
Cpe08g00138 Cpe-Chr8:889073 Cpe19g01160 Cpe-Chr19:7771936 5.58E-80 dispersed
Cpe08g00138 Cpe-Chr8:889073 Cpe09g00182 Cpe-Chr9:1052570 8.87E-157 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g220 . . . . . Bpe14g01082 . . . . . . Car06g01342 . . Cpe08g00138 . Bhi01g01110 . . . Hepe05g1357 . Lcy11g1319 . . . . . . . . . . . Lsi05g01401 . . Cme06g00818 . . . . . . Bma02g00943 . . Cmo06g01573 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011276 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00138 Cpe_Chr08 FPKM 15.297071 15.038307 2.961998 2.971108 6.389507 6.501923 5.639167 0.0 0.0 0.0