Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00141 CCTCAACTTTCTCTATCTATAAAACCACCCCCCTTTCTTCTCTGTCCTCCCCGTAGCCCCCTTTCTCTCTCTAAAAACCTTCGCCGGAAATCAAATCCTTTCTCTACTGATCGCCGGGAAATGGACGGAAATAAAGACCGAATGATCGATTCCGGTAACTTCCACGGCGGCGACGATGATGGAGACCTGAGACGTGGACCGTGGACGGTCGAGGAAGACATAGCTCTCATCAATTACATCGCTAATCACGGCGACGGCCGCTGGAATTTGCTCGCTCGCTGCGCAGGTCTGAAACGTACCGGAAAAAGCTGCCGGTTGCGGTGGCTGAACTATCTCCGCCCCGACGTCCGCCGTGGAAACATTACGCTTGAAGAACAGCTCTTGATTCTCGATCTTCATTCTCCCGCCGCCGGGGCAACCGCCGTCGACGGCAACGGATCGTACGGATCAGTGGCGCCGCCGCTGATGAACGGGAGTGATTTCGTTAGTACTTCACAAGTCACTCCGAGTTACGCGTCGGAGAATTCCAGCTCCGGTGGAGGCTCCTCCGACGGGACACAGGGCTCCTCCGTGTCGGAGTTGACGGATTGCTACAATAATTTCGGTTGTTTTTCGGTGGGGTATGGGCAAGATACGGCACCACCGCCACCCCCGCCGCCGCCGATGCAGAGCTCGGCGGTTGGATTCTTTAACGAGGGGGAATTGGATTTTCAAGCGATGGAGCAGAGTTCTTGCGAGTGGCTGGCGGAGGACGGCGGCGTTGACACATCGGAGAACTTCTGGAGTACCGCCGGCCCCGGCGCCGACTACTTCTGGCTCTTGCAGCAGCAACTGAAT 837 56.75 PQLSLSIKPPPFLLCPPRSPLSLSKNLRRKSNPFSTDRREMDGNKDRMIDSGNFHGGDDDGDLRRGPWTVEEDIALINYIANHGDGRWNLLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILDLHSPAAGATAVDGNGSYGSVAPPLMNGSDFVSTSQVTPSYASENSSSGGGSSDGTQGSSVSELTDCYNNFGCFSVGYGQDTAPPPPPPPPMQSSAVGFFNEGELDFQAMEQSSCEWLAEDGGVDTSENFWSTAGPGADYFWLLQQQLN 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 915472 916723 + Cp4.1LG08g05380.1 Cpe08g00141 473107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00141 279 CDD SANT 67 112 IPR001005 -
Cpe08g00141 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 116 IPR017930 -
Cpe08g00141 279 PANTHER MYB TRANSCRIPTION FACTOR 50 134 - -
Cpe08g00141 279 MobiDBLite consensus disorder prediction 162 190 - -
Cpe08g00141 279 ProSiteProfiles Myb-like domain profile. 60 112 IPR001005 -
Cpe08g00141 279 MobiDBLite consensus disorder prediction 31 60 - -
Cpe08g00141 279 PANTHER MYB TRANSCRIPTION FACTOR 141 263 - -
Cpe08g00141 279 MobiDBLite consensus disorder prediction 25 60 - -
Cpe08g00141 279 Pfam Myb-like DNA-binding domain 65 112 IPR001005 -
Cpe08g00141 279 Gene3D - 66 117 - -
Cpe08g00141 279 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 50 134 IPR044676 GO:0003700|GO:0006355|GO:0043565
Cpe08g00141 279 SUPERFAMILY Homeodomain-like 66 134 IPR009057 -
Cpe08g00141 279 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 141 263 IPR044676 GO:0003700|GO:0006355|GO:0043565
Cpe08g00141 279 SMART sant 64 114 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00141 K09422 MYBP; transcription factor MYB, plant - csv:101222436 199.904
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01316 Cpe08g00141 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01260 Cpe-Chr2:11322930 Cpe08g00141 Cpe-Chr8:915472 1.00E-40 dispersed
Cpe03g00569 Cpe-Chr3:3387314 Cpe08g00141 Cpe-Chr8:915472 2.32E-39 dispersed
Cpe08g00141 Cpe-Chr8:915472 Cpe12g00873 Cpe-Chr12:7634788 2.68E-37 dispersed
Cpe03g01316 Cpe-Chr3:10708675 Cpe08g00141 Cpe-Chr8:915472 4.76E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g28 . . . . . Bpe14g01085 . . . . Cma06g01575 Cma14g01575 Car06g01338 Car14g01388 . Cpe08g00141 Cpe03g01316 Bhi01g01104 . . . . . Lcy11g1324 . . . . . . . . . . Cone4ag0095 Lsi05g01407 . . Cme06g00803 Blo02g00466 Blo07g00130 Bda11g00491 Bda13g00228 . Bpe13g00708 Bma02g00940 . . Cmo06g01569 Cmo14g01609 . . . . . . . . . . . . . Cla05g00720 . . . . . . . Csa03g01533 Chy06g00770 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004012 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49821 PF00249 Myb_DNA-binding 1.50E-15 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00141 Cpe_Chr08 FPKM 11.635015 11.013809 13.765009 16.734442 11.824299 12.930493 12.063107 18.878672 18.726517 15.259589