Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00149 ATGGTTTCGAGTAATCGGGGGACGAATTCGCATCAGCAACAAGCAGAGTCCTCGAACACGAACACGAACACGAACACGAGCCATATGCGATCTAATCGTACAGAATCCATCAGCAAAGCCGTAGCGCAGTACACCATCGATGCTCGTCTTCACGCAGTGTTTGAACAGTCAGGTGAGTCCGGTAAATCTTTTGACTACTCACAATCTATTAGAACTTCGACACAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTATCGATGATTCAAAGGGGCGGCCATATCCAGCCCTTTGGATGTATGATAGCCATCGATGAGGCAAATTTTCGGGTTATTGCTTATAGTGAAAACACTAGGGAATTGCTTGGTCTTACTCCTCAATCAGTGCCAAATCTTGAAAAGATAGAGATTCTCACAATTGGAACTGATGTACGGAACTTGTTCACTTCCAATAGTGCAATTTTGCTTGAGAAAGCATTTGGGGCTCGAGAAATCACTTTGTTAAACCCTGTTTGGGTTCATTCTAAGAATTCTTTGAAGCCATTTTATGCTATTTTGCATAGGATTGATGTCGGAATTGTGATTGATTTAGAGCCAGCAAGAACGGAGGATCCTGCCCTTTCTATTGCTGGGGCAGTCCAATCGCAAAAGCTTGCAGTGCGTGCAATTTCTAAGCTACAAGCACTCCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATACGATCGAGTTATGGTGTATAAGTTTCACGAAGACGAGCACGGTGAGGTTGTCGCTGAAAGCAAGAGGCCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCGAGGTTTTTGTTTAAGCAAAACCGTGTTAGAATGATTGTCGATTGCCATGCTTCTCCAGTTCGTGTAATTCAGGCTGCAGGGCTTATGCAACCTCTTTGCTTAGTGGGTTCGACTCTTCGTGCTCCCCATGGCTGTCATTCTCAGTATATGGCCAATATGGGCTCCATTTCGTCGTTAGCAATGGCGGTTGTTATCAATAATAACGACGACGAAGCTATTGGTGGGCGAAGTTCAACGAGGCTTTGGGGTTTGGTTGTTTGCCACCATACTTCGGCTCGGTGTATTCCGTTCCCTCTCCGGTATGCATGTGAGTTTCTAATGCAAGCATTTGGACTTCAACTTAATATGGAATTGCAATTGGCTTCACAGATGTCTGAGAAACATGTTTTGAGAACTCAAACTCTTTTATGTGACATGCTTCTTCGTGATTCCCCAACTGGCATTATTACTCAGAGTCCAAGCATCATGGACTTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGGGAAGTATTACCCTCTAGGCGTGACGCCAACCGAAGCCCAAATAAAGGACGTCGTGGAATGGTTGCTAGCTTTCCATGGCGATTCAACTGGTTTAAGTACAGACAGCTTGGCCGATGCTGGCTATCCAGGGGCAGCCTTGCTTGGTGGTGCAGTTTGTGGAATGGATGTTGCCTATATCACCAAAAGGGATTTTCTCTTCTGGTTCCGATCGCACACAGGAAAAGAGATCAAGTGGGGCGGCGCAAAGCATCACCCAGCGGATAAGGACGATGGTCAAAGAATGCATCCACGTTCTTCGTTCAAGGCATTTCTAGAAGTAGTAAAATCGCGTAGTTTACCGTGGGAGACTGCAGAAATGGATGCTATTCACTCATTGCAGCTTATTCTTCGAGATTCATTCAAGGATAACGCTGCAATCAATTCGAAAACAGTTGTGCATCCTCAACTAGGGGATCTCAACTTGCAAGGGATCGATGAGCTCAGCTTGGTTGCTAGAGAAATGGTCAGGTTGATCGAGACTGCAACTGCTCCAATCTTTGCTGTAGATGTCGACAGCTGTATCAATGGATGGAACACTAAGATAGCAGAGTTGACTGGGCTTGCAGTCGAGGAAGCTATGGGGAAATCCCTAGTTCGTGATCTCGTGTATAAAGAATCTGAAGAAATAGTCGACAAACTCGTTTCCCGGGCTTTAAAAGGTGAAGAAGAAAAGAATATAGAGATAAAAATGAAGACATTTGGGCGAGATCCAGATGATCAAAGACAGCCAATTTTTGTGGCTGTCAATGCTTGTTCTAGCAGGGACTACACTGATAACATAGTAGGCGTTTGTTTTGTTGGTCAAGATCTTACCTGCCAAAAAGTGTTCATGGACAAATTTATTAGCATACAATGTGATTATAAAGCCATTGTTCATAGTCCCAGTCCTCTTATCCCTCCAATATTCGCTTCGGACGACAATACGTGTTGCTCGGAATGGAATACCGCCATGGAAAACCTCACCGGATGGTCCAGAGAAGACATAATTGGAAAAATGCTAGTAGGGGAGGTTTTTGGAGATTGTTGTAGACTGAAGGGGCCAGATGAATTGACCAAATTCATGATTGTCTTGCACGGTGCAATTGGAGGGAAGAACAATGAAAAATTCCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTGCAGGCTCTGTTGACAGCAAATAAGAGGATGAATATGGAGGGGCAGATTGTTGGAGCTTTCTGCTTTGTTCAGATTGCCAGTCTTGAATTGCAGCAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTTGTAAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCGCTTCTGGAGGCTACGGATTTGAGTGAAGACCAGAAGCAGTTTCTGGAGACCAGTGTTTCTTGTGAAAAGCAGATTACAATGGAGATTGAGAAGGGGGAGTTCTTACTGGGAAGTGTTATTAATGCTGTTGTTAGTCAAGCGATGTTACTACTCAGAGAAAGAAACTTACAACTGGTTCGTGATATACCAGAAGAAGTAAAGACTATGGCTGTATATGGCGATCAAGTGAGAATTCAACAGGTCTTAGCTGATTTCTTGTTGAACATGGTGCGTTACGCACCGTCTCCGGAAGGCTGGGTAGAATTACGTGTCTGTCCATTCCTGAAGCAAAACTCGGATCGACTTCGTCTCGCACGCACCGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCTCCTGAGTTGATACAGGACATGTTTCACAGTGGGCGATGGGCGACTCAAGAAGGATTAGGGTTGAGCATGTGCAGAAAGATTCTGAAGCTCATGAATGGTGAAGTCCAATACATCAGAGAATCTGAAAGATGTTATTTCTCGATCACTCTCGAACTCCCTTTAACAGAGAGAGCCCTCGGCGACATCGGTTAG 3369 44.46 MVSSNRGTNSHQQQAESSNTNTNTNTSHMRSNRTESISKAVAQYTIDARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEQQITAYLSMIQRGGHIQPFGCMIAIDEANFRVIAYSENTRELLGLTPQSVPNLEKIEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWVHSKNSLKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISKLQALPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVRVIQAAGLMQPLCLVGSTLRAPHGCHSQYMANMGSISSLAMAVVINNNDDEAIGGRSSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQMSEKHVLRTQTLLCDMLLRDSPTGIITQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDVVEWLLAFHGDSTGLSTDSLADAGYPGAALLGGAVCGMDVAYITKRDFLFWFRSHTGKEIKWGGAKHHPADKDDGQRMHPRSSFKAFLEVVKSRSLPWETAEMDAIHSLQLILRDSFKDNAAINSKTVVHPQLGDLNLQGIDELSLVAREMVRLIETATAPIFAVDVDSCINGWNTKIAELTGLAVEEAMGKSLVRDLVYKESEEIVDKLVSRALKGEEEKNIEIKMKTFGRDPDDQRQPIFVAVNACSSRDYTDNIVGVCFVGQDLTCQKVFMDKFISIQCDYKAIVHSPSPLIPPIFASDDNTCCSEWNTAMENLTGWSREDIIGKMLVGEVFGDCCRLKGPDELTKFMIVLHGAIGGKNNEKFPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFVQIASLELQQTLRMQRQQEKNRFVRMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVSCEKQITMEIEKGEFLLGSVINAVVSQAMLLLRERNLQLVRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVELRVCPFLKQNSDRLRLARTEFRIVCPGEGLPPELIQDMFHSGRWATQEGLGLSMCRKILKLMNGEVQYIRESERCYFSITLELPLTERALGDIG 1122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 975528 981686 - Cp4.1LG08g05280.1 Cpe08g00149 473115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00149 1122 ProSiteProfiles Histidine kinase domain profile. 910 1115 IPR005467 -
Cpe08g00149 1122 CDD HisKA 896 953 IPR003661 GO:0000155|GO:0007165
Cpe08g00149 1122 Gene3D - 416 589 IPR043150 -
Cpe08g00149 1122 CDD PAS 773 881 IPR000014 -
Cpe08g00149 1122 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 963 1109 IPR036890 -
Cpe08g00149 1122 Gene3D PAS domain 619 755 - -
Cpe08g00149 1122 SUPERFAMILY GAF domain-like 419 597 - -
Cpe08g00149 1122 Pfam Phytochrome region 424 599 IPR013515 GO:0006355|GO:0009584
Cpe08g00149 1122 ProSitePatterns Phytochrome chromophore attachment site signature. 333 342 IPR013516 -
Cpe08g00149 1122 MobiDBLite consensus disorder prediction 1 33 - -
Cpe08g00149 1122 PRINTS Phytochrome signature 724 741 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 PRINTS Phytochrome signature 648 663 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 PRINTS Phytochrome signature 559 577 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 PRINTS Phytochrome signature 148 170 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 PRINTS Phytochrome signature 441 461 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 PRINTS Phytochrome signature 333 354 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 PRINTS Phytochrome signature 526 545 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 PRINTS Phytochrome signature 744 764 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 PRINTS Phytochrome signature 248 267 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 PRINTS Phytochrome signature 629 645 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 Pfam PAS fold 629 745 IPR013767 GO:0006355
Cpe08g00149 1122 Pfam PAS fold 762 881 IPR013767 GO:0006355
Cpe08g00149 1122 Pfam GAF domain 233 411 IPR003018 GO:0005515
Cpe08g00149 1122 Gene3D - 953 1117 IPR036890 -
Cpe08g00149 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 631 742 IPR035965 -
Cpe08g00149 1122 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1000 1111 IPR003594 -
Cpe08g00149 1122 SMART gaf_1 233 421 IPR003018 GO:0005515
Cpe08g00149 1122 SMART pas_2 628 695 IPR000014 -
Cpe08g00149 1122 SMART pas_2 761 831 IPR000014 -
Cpe08g00149 1122 ProSiteProfiles PAS repeat profile. 626 697 IPR000014 -
Cpe08g00149 1122 TIGRFAM sensory_box: PAS domain S-box protein 633 747 IPR000014 -
Cpe08g00149 1122 CDD PAS 637 746 IPR000014 -
Cpe08g00149 1122 PIRSF Phytochrome_conventional 17 1119 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cpe08g00149 1122 SUPERFAMILY GAF domain-like 213 408 - -
Cpe08g00149 1122 CDD HATPase_Phy-like 999 1111 IPR044767 -
Cpe08g00149 1122 ProSiteProfiles PAS repeat profile. 762 814 IPR000014 -
Cpe08g00149 1122 SMART HKATPase_4 1000 1115 IPR003594 -
Cpe08g00149 1122 PANTHER TWO-COMPONENT HISTIDINE KINASE 12 1116 - -
Cpe08g00149 1122 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 233 401 IPR016132 -
Cpe08g00149 1122 Gene3D - 214 572 IPR029016 -
Cpe08g00149 1122 Pfam PAS fold 84 200 IPR013654 GO:0006355
Cpe08g00149 1122 PANTHER PHYTOCHROME 12 1116 - -
Cpe08g00149 1122 Gene3D PAS domain 775 887 - -
Cpe08g00149 1122 Gene3D PAS domain 89 336 - -
Cpe08g00149 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 776 880 IPR035965 -
Cpe08g00149 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 89 203 IPR035965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00149 K12121 PHYB; phytochrome B - csv:101212197 2040.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01327 Cpe08g00149 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00149 Cpe-Chr8:975528 Cpe20g00493 Cpe-Chr20:2847129 0 dispersed
Cpe03g01327 Cpe-Chr3:10783802 Cpe08g00149 Cpe-Chr8:975528 6.15E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g63 Blo01g00030 . . Bda08g00333 . . . Bma05g00993 . . Cma06g01564 Cma14g01590 Car06g01329 Car14g01399 Sed02g1136 Cpe08g00149 Cpe03g01327 Bhi01g01090 Tan10g1077 Cmetu06g1585 . Hepe05g1374 . Lcy11g1336 . . . . . . . Cone14ag0717 Cone15ag0729 . . Lsi05g01420 . . Cme06g00790 . Blo07g00144 Bda11g00500 . Bpe05g00798 Bpe13g00697 . Bma06g01466 . Cmo06g01560 Cmo14g01619 . . . . . . . . . . . . . Cla05g00707 Cam05g0774 Cec05g0782 Cco05g0775 Clacu05g0764 Cmu05g0730 Cre05g0804 . Csa03g01519 Chy06g00756 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe14g01030 . 5 1148 Histidine Kinase Gene Family AT2G17820 63.4 0.0e+00 1401.7
Cpe08g01314 . 5 1195 Histidine Kinase Gene Family AT2G17820 61.5 0.0e+00 1370.1
Cpe01g00013 . 28 1008 Histidine Kinase Gene Family AT2G01830 70.6 0.0e+00 1326.2
Cpe13g00429 CCT 5 964 Histidine Kinase Gene Family AT2G01830 71.9 0.0e+00 1307.7
Cpe01g01858 CCT 23 1023 Histidine Kinase Gene Family AT2G01830 69.1 0.0e+00 1302.0
Cpe16g00390 . 301 1244 Histidine Kinase Gene Family AT2G01830 52.9 1.2e-269 926.8
Cpe04g00676 . 280 1205 Histidine Kinase Gene Family AT2G01830 52.8 4.0e-268 921.8
Cpe01g00966 . 99 1016 Histidine Kinase Gene Family AT2G01830 52.0 7.5e-259 891.0
Cpe02g00308 CCT 1 998 Histidine Kinase Gene Family AT5G10720 57.2 1.2e-292 1003.0
Cpe06g00274 CCT 1 996 Histidine Kinase Gene Family AT5G10720 56.1 6.1e-289 990.7
Cpe11g00763 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.5 0.0e+00 1820.1
Cpe07g00609 . 35 1108 Histidine Kinase Gene Family AT1G09570 70.5 0.0e+00 1575.5
Cpe15g00685 . 18 1111 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1206.0
Cpe03g01327 CST 443 1507 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1178.3
Cpe08g00149 CST 31 1111 Histidine Kinase Gene Family AT1G09570 52.2 0.0e+00 1138.6
Cpe03g01327 CST 421 1448 Histidine Kinase Gene Family AT2G18790 77.5 0.0e+00 1625.1
Cpe08g00149 CST 30 1052 Histidine Kinase Gene Family AT2G18790 76.9 0.0e+00 1594.3
Cpe20g00493 CCT 31 1050 Histidine Kinase Gene Family AT2G18790 59.7 0.0e+00 1228.8
Cpe09g00775 CCT 31 1025 Histidine Kinase Gene Family AT2G18790 60.2 0.0e+00 1212.2
Cpe11g00763 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1087.8
Cpe15g00685 . 26 1068 Histidine Kinase Gene Family AT2G18790 52.0 0.0e+00 1076.6
Cpe07g00609 . 38 1042 Histidine Kinase Gene Family AT2G18790 50.3 3.0e-298 1021.9
Cpe15g00685 . 12 1115 Histidine Kinase Gene Family AT5G35840 60.8 0.0e+00 1359.0
Cpe03g01327 CST 429 1509 Histidine Kinase Gene Family AT5G35840 51.9 0.0e+00 1124.4
Cpe11g00763 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1110.5
Cpe08g00149 CST 31 1113 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1099.7
Cpe03g01327 CST 438 1509 Histidine Kinase Gene Family AT4G16250 75.8 0.0e+00 1668.7
Cpe08g00149 CST 34 1113 Histidine Kinase Gene Family AT4G16250 73.5 0.0e+00 1627.1
Cpe20g00493 CCT 32 1112 Histidine Kinase Gene Family AT4G16250 57.9 0.0e+00 1268.8
Cpe09g00775 CCT 38 1081 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1230.7
Cpe11g00763 . 8 1115 Histidine Kinase Gene Family AT4G16250 53.0 0.0e+00 1135.9
Cpe15g00685 . 26 1114 Histidine Kinase Gene Family AT4G16250 52.0 0.0e+00 1106.7
Cpe07g00609 . 37 1103 Histidine Kinase Gene Family AT4G16250 50.5 7.1e-311 1063.9
Cpe20g00493 CCT 15 1126 Histidine Kinase Gene Family AT4G18130 62.7 0.0e+00 1369.8
Cpe09g00775 CCT 15 1098 Histidine Kinase Gene Family AT4G18130 60.2 0.0e+00 1308.1
Cpe03g01327 CST 446 1507 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1250.3
Cpe08g00149 CST 42 1111 Histidine Kinase Gene Family AT4G18130 56.8 0.0e+00 1233.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004550 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00149 Cpe_Chr08 FPKM 42.408207 47.148746 27.760756 30.342251 16.172163 16.767532 16.451473 37.731365 39.470432 39.320484
Cpe08g00149 Cpe_Chr00 FPKM 23.495371 25.95772 19.24321 18.576927 9.82185 11.942387 9.531576 28.322315 27.316929 27.30345