Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00149 ATGGTTTCGAGTAATCGGGGGACGAATTCGCATCAGCAACAAGCAGAGTCCTCGAACACGAACACGAACACGAACACGAGCCATATGCGATCTAATCGTACAGAATCCATCAGCAAAGCCGTAGCGCAGTACACCATCGATGCTCGTCTTCACGCAGTGTTTGAACAGTCAGGTGAGTCCGGTAAATCTTTTGACTACTCACAATCTATTAGAACTTCGACACAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTATCGATGATTCAAAGGGGCGGCCATATCCAGCCCTTTGGATGTATGATAGCCATCGATGAGGCAAATTTTCGGGTTATTGCTTATAGTGAAAACACTAGGGAATTGCTTGGTCTTACTCCTCAATCAGTGCCAAATCTTGAAAAGATAGAGATTCTCACAATTGGAACTGATGTACGGAACTTGTTCACTTCCAATAGTGCAATTTTGCTTGAGAAAGCATTTGGGGCTCGAGAAATCACTTTGTTAAACCCTGTTTGGGTTCATTCTAAGAATTCTTTGAAGCCATTTTATGCTATTTTGCATAGGATTGATGTCGGAATTGTGATTGATTTAGAGCCAGCAAGAACGGAGGATCCTGCCCTTTCTATTGCTGGGGCAGTCCAATCGCAAAAGCTTGCAGTGCGTGCAATTTCTAAGCTACAAGCACTCCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATACGATCGAGTTATGGTGTATAAGTTTCACGAAGACGAGCACGGTGAGGTTGTCGCTGAAAGCAAGAGGCCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCGAGGTTTTTGTTTAAGCAAAACCGTGTTAGAATGATTGTCGATTGCCATGCTTCTCCAGTTCGTGTAATTCAGGCTGCAGGGCTTATGCAACCTCTTTGCTTAGTGGGTTCGACTCTTCGTGCTCCCCATGGCTGTCATTCTCAGTATATGGCCAATATGGGCTCCATTTCGTCGTTAGCAATGGCGGTTGTTATCAATAATAACGACGACGAAGCTATTGGTGGGCGAAGTTCAACGAGGCTTTGGGGTTTGGTTGTTTGCCACCATACTTCGGCTCGGTGTATTCCGTTCCCTCTCCGGTATGCATGTGAGTTTCTAATGCAAGCATTTGGACTTCAACTTAATATGGAATTGCAATTGGCTTCACAGATGTCTGAGAAACATGTTTTGAGAACTCAAACTCTTTTATGTGACATGCTTCTTCGTGATTCCCCAACTGGCATTATTACTCAGAGTCCAAGCATCATGGACTTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGGGAAGTATTACCCTCTAGGCGTGACGCCAACCGAAGCCCAAATAAAGGACGTCGTGGAATGGTTGCTAGCTTTCCATGGCGATTCAACTGGTTTAAGTACAGACAGCTTGGCCGATGCTGGCTATCCAGGGGCAGCCTTGCTTGGTGGTGCAGTTTGTGGAATGGATGTTGCCTATATCACCAAAAGGGATTTTCTCTTCTGGTTCCGATCGCACACAGGAAAAGAGATCAAGTGGGGCGGCGCAAAGCATCACCCAGCGGATAAGGACGATGGTCAAAGAATGCATCCACGTTCTTCGTTCAAGGCATTTCTAGAAGTAGTAAAATCGCGTAGTTTACCGTGGGAGACTGCAGAAATGGATGCTATTCACTCATTGCAGCTTATTCTTCGAGATTCATTCAAGGATAACGCTGCAATCAATTCGAAAACAGTTGTGCATCCTCAACTAGGGGATCTCAACTTGCAAGGGATCGATGAGCTCAGCTTGGTTGCTAGAGAAATGGTCAGGTTGATCGAGACTGCAACTGCTCCAATCTTTGCTGTAGATGTCGACAGCTGTATCAATGGATGGAACACTAAGATAGCAGAGTTGACTGGGCTTGCAGTCGAGGAAGCTATGGGGAAATCCCTAGTTCGTGATCTCGTGTATAAAGAATCTGAAGAAATAGTCGACAAACTCGTTTCCCGGGCTTTAAAAGGTGAAGAAGAAAAGAATATAGAGATAAAAATGAAGACATTTGGGCGAGATCCAGATGATCAAAGACAGCCAATTTTTGTGGCTGTCAATGCTTGTTCTAGCAGGGACTACACTGATAACATAGTAGGCGTTTGTTTTGTTGGTCAAGATCTTACCTGCCAAAAAGTGTTCATGGACAAATTTATTAGCATACAATGTGATTATAAAGCCATTGTTCATAGTCCCAGTCCTCTTATCCCTCCAATATTCGCTTCGGACGACAATACGTGTTGCTCGGAATGGAATACCGCCATGGAAAACCTCACCGGATGGTCCAGAGAAGACATAATTGGAAAAATGCTAGTAGGGGAGGTTTTTGGAGATTGTTGTAGACTGAAGGGGCCAGATGAATTGACCAAATTCATGATTGTCTTGCACGGTGCAATTGGAGGGAAGAACAATGAAAAATTCCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTGCAGGCTCTGTTGACAGCAAATAAGAGGATGAATATGGAGGGGCAGATTGTTGGAGCTTTCTGCTTTGTTCAGATTGCCAGTCTTGAATTGCAGCAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTTGTAAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCGCTTCTGGAGGCTACGGATTTGAGTGAAGACCAGAAGCAGTTTCTGGAGACCAGTGTTTCTTGTGAAAAGCAGATTACAATGGAGATTGAGAAGGGGGAGTTCTTACTGGGAAGTGTTATTAATGCTGTTGTTAGTCAAGCGATGTTACTACTCAGAGAAAGAAACTTACAACTGGTTCGTGATATACCAGAAGAAGTAAAGACTATGGCTGTATATGGCGATCAAGTGAGAATTCAACAGGTCTTAGCTGATTTCTTGTTGAACATGGTGCGTTACGCACCGTCTCCGGAAGGCTGGGTAGAATTACGTGTCTGTCCATTCCTGAAGCAAAACTCGGATCGACTTCGTCTCGCACGCACCGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCTCCTGAGTTGATACAGGACATGTTTCACAGTGGGCGATGGGCGACTCAAGAAGGATTAGGGTTGAGCATGTGCAGAAAGATTCTGAAGCTCATGAATGGTGAAGTCCAATACATCAGAGAATCTGAAAGATGTTATTTCTCGATCACTCTCGAACTCCCTTTAACAGAGAGAGCCCTCGGCGACATCGGTTAG 3369 44.46 MVSSNRGTNSHQQQAESSNTNTNTNTSHMRSNRTESISKAVAQYTIDARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEQQITAYLSMIQRGGHIQPFGCMIAIDEANFRVIAYSENTRELLGLTPQSVPNLEKIEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWVHSKNSLKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISKLQALPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVRVIQAAGLMQPLCLVGSTLRAPHGCHSQYMANMGSISSLAMAVVINNNDDEAIGGRSSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQMSEKHVLRTQTLLCDMLLRDSPTGIITQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDVVEWLLAFHGDSTGLSTDSLADAGYPGAALLGGAVCGMDVAYITKRDFLFWFRSHTGKEIKWGGAKHHPADKDDGQRMHPRSSFKAFLEVVKSRSLPWETAEMDAIHSLQLILRDSFKDNAAINSKTVVHPQLGDLNLQGIDELSLVAREMVRLIETATAPIFAVDVDSCINGWNTKIAELTGLAVEEAMGKSLVRDLVYKESEEIVDKLVSRALKGEEEKNIEIKMKTFGRDPDDQRQPIFVAVNACSSRDYTDNIVGVCFVGQDLTCQKVFMDKFISIQCDYKAIVHSPSPLIPPIFASDDNTCCSEWNTAMENLTGWSREDIIGKMLVGEVFGDCCRLKGPDELTKFMIVLHGAIGGKNNEKFPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFVQIASLELQQTLRMQRQQEKNRFVRMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVSCEKQITMEIEKGEFLLGSVINAVVSQAMLLLRERNLQLVRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVELRVCPFLKQNSDRLRLARTEFRIVCPGEGLPPELIQDMFHSGRWATQEGLGLSMCRKILKLMNGEVQYIRESERCYFSITLELPLTERALGDIG 1122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 975528 981686 - Cp4.1LG08g05280.1 Cpe08g00149 473115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00149 1122 ProSiteProfiles Histidine kinase domain profile. 910 1115 IPR005467 -
Cpe08g00149 1122 CDD HisKA 896 953 IPR003661 GO:0000155|GO:0007165
Cpe08g00149 1122 Gene3D - 416 589 IPR043150 -
Cpe08g00149 1122 CDD PAS 773 881 IPR000014 -
Cpe08g00149 1122 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 963 1109 IPR036890 -
Cpe08g00149 1122 Gene3D PAS domain 619 755 - -
Cpe08g00149 1122 SUPERFAMILY GAF domain-like 419 597 - -
Cpe08g00149 1122 Pfam Phytochrome region 424 599 IPR013515 GO:0006355|GO:0009584
Cpe08g00149 1122 ProSitePatterns Phytochrome chromophore attachment site signature. 333 342 IPR013516 -
Cpe08g00149 1122 MobiDBLite consensus disorder prediction 1 33 - -
Cpe08g00149 1122 PRINTS Phytochrome signature 724 741 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 PRINTS Phytochrome signature 648 663 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 PRINTS Phytochrome signature 559 577 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 PRINTS Phytochrome signature 148 170 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 PRINTS Phytochrome signature 441 461 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 PRINTS Phytochrome signature 333 354 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 PRINTS Phytochrome signature 526 545 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 PRINTS Phytochrome signature 744 764 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 PRINTS Phytochrome signature 248 267 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 PRINTS Phytochrome signature 629 645 IPR001294 GO:0006355|GO:0009584
Cpe08g00149 1122 Pfam PAS fold 629 745 IPR013767 GO:0006355
Cpe08g00149 1122 Pfam PAS fold 762 881 IPR013767 GO:0006355
Cpe08g00149 1122 Pfam GAF domain 233 411 IPR003018 GO:0005515
Cpe08g00149 1122 Gene3D - 953 1117 IPR036890 -
Cpe08g00149 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 631 742 IPR035965 -
Cpe08g00149 1122 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1000 1111 IPR003594 -
Cpe08g00149 1122 SMART gaf_1 233 421 IPR003018 GO:0005515
Cpe08g00149 1122 SMART pas_2 628 695 IPR000014 -
Cpe08g00149 1122 SMART pas_2 761 831 IPR000014 -
Cpe08g00149 1122 ProSiteProfiles PAS repeat profile. 626 697 IPR000014 -
Cpe08g00149 1122 TIGRFAM sensory_box: PAS domain S-box protein 633 747 IPR000014 -
Cpe08g00149 1122 CDD PAS 637 746 IPR000014 -
Cpe08g00149 1122 PIRSF Phytochrome_conventional 17 1119 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cpe08g00149 1122 SUPERFAMILY GAF domain-like 213 408 - -
Cpe08g00149 1122 CDD HATPase_Phy-like 999 1111 IPR044767 -
Cpe08g00149 1122 ProSiteProfiles PAS repeat profile. 762 814 IPR000014 -
Cpe08g00149 1122 SMART HKATPase_4 1000 1115 IPR003594 -
Cpe08g00149 1122 PANTHER TWO-COMPONENT HISTIDINE KINASE 12 1116 - -
Cpe08g00149 1122 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 233 401 IPR016132 -
Cpe08g00149 1122 Gene3D - 214 572 IPR029016 -
Cpe08g00149 1122 Pfam PAS fold 84 200 IPR013654 GO:0006355
Cpe08g00149 1122 PANTHER PHYTOCHROME 12 1116 - -
Cpe08g00149 1122 Gene3D PAS domain 775 887 - -
Cpe08g00149 1122 Gene3D PAS domain 89 336 - -
Cpe08g00149 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 776 880 IPR035965 -
Cpe08g00149 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 89 203 IPR035965 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01327 Cpe08g00149 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00149 Cpe-Chr8:975528 Cpe20g00493 Cpe-Chr20:2847129 0 dispersed
Cpe03g01327 Cpe-Chr3:10783802 Cpe08g00149 Cpe-Chr8:975528 6.15E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00149 K12121 - csv:101212197 2040.0