Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00151 ATGCAAGTCTTCTCTTCATCTCCTTCAACCACAAGCTTCAATCTGTTCTCTTCATCTCAAAATCCGAACAATCTCTCGAAATACAGATGCAAAAATTTGATTATACCTCTCCATTTCGCTCCGAGCTCCCTCTCCGTTTGCTGTTCTTCGAGGGAGTCCTCGACGGCGGTTCTCTCCTCCGATCGGTCGTTGGACGGCGAGAACAGAGAGGCGTCGGAGGAGGTTCTTAGAGTTCGGCGGCCGGTAATGGAGTTTACCGGTGAAGATTCCGGCGACGGCGAGGAGGCGGAAGATGAGAGTTCTTCGGTGATAGAACTAGGGCTAGCGGAGATTGCGAAGAAGATGCCGATATTTGAACCGGAGAATCGGGTGGATTCGAGTGCCCTAGAAAGGCCGCTGATTATCAATTTGGATTTGGCGTTGTACAAAGCGAAGATGATGGCGAGGAATTTTCTGTATGATGAAGCACGGCAAGTCCTTCAGAAGCGCGTGATTTGGTTGGGAAAGTGTATAGATAAATGGCCGGAGGATGGGCGGGCATACGTAGCATTGGGGAAGATGTTGAGCAAGCAAATGAAAGCAGCCGACGCCAGAGCTGTGTATGAGAGAGGCTGCCAAGCCACCCAAGGCGAGAACTCCTACATTTGGCAGTGCTGGGCTGTTCTGGAGAGCAGGATGGGGAATATCAGGAAAGCAAGAGAGCTCTTTGATGCAGCCACAGTAGCCAACAAGAAGCACATTGCCGCATGGCATGGCTGGGCTGTGCTAGAGCTAAAGCAGGGGAACCTCAAGAAGGCCAGGAATCTACTAGCCAAAGGCCTCAAATACTGTGGTGGGAATGAGTATATCTATCAAACACTCGCCCTGCTCGAAGCCAAATCGAATCGATACGAGCAGGCGCGTTATTTGTTTAAGCAGGCTACCAAGTGCAACCCCAAAAGCTGTGCTAGTTGGCTTGCATGGGCTCAGCTGGAGATGCAGCGGGAGAACAACCTTCTTGCTAGACAACTGTTTGAGAAAGCCATCCAGGCGAGCCCCAAGAACAGGTTTGCGTGGCACATATGGGGGCTCTTTGAAGCTAATATAGGAAATATCGAGAAGGGAAGGAAACTTTTAAAGATAGGCCATGTCCTAAATCCAAGAGACCCTGTTCTTCTTCAGTCTCTTGGTTTATTAGAGTATAAGAACTCCTCTGCAAGCCTGGCTCGAGTTTTGTTTAGGAGAGCATCTGAACTGGACCCCAAGCACCAACCAGTGTGGATTGCTTGGGGATGGATGGAATGGAAAGAAGGTAACATAGGGAAAGCAAGGGAGCTGTATCAAAGAGCATTGTTGATTGACTCAGCTAGTGAGAGTGCAGCTCGATGCCTTCAGGCTTGGGGTGTTCTAGAACAGAGAGCAGGCAACCTATCAGCAGCTAGAAGATTATATAGATCCTCTCTAAGCATAAACTCTCAGAGTTATGTAACATGGATGACCTGGGCAGCACTGGAAGATGATCAAGGGAACGCAATCCGAGCGGAGGAAATTCGAAATCTATACTTCCAGCAGAGAACAGAAGTTGTGGATGATGCCTCGTGGGTTATGGGGATCTTAGACGTTATTGACCCAGCACTTGATAGCATAAAGAGGCTGTTGAAGCTGGAGCAAGACCCCTTCGCCATGTCAAGAGTAGCAGATGTAGGCGCTAGAAACGCCTCATTAGACGACTCGGCTGCCTCCTCTAGTGTGGCTGACAGTGAAACTGGGTTTGATTTGGATGCCTTTATGATGAAAAAGTTGTCGATAGACACGTCGAAACTCGAAATTCAACTCGAAACAACTCGACCCAAAAGATTTAAGTATCAAAGAAGTCAAATGAGATCAGAAAACAGACCAGAAATGGCTGTTTCAGAGAGCCAAAGAACAGCATCTTCATCTACTTGA 1926 48.39 MQVFSSSPSTTSFNLFSSSQNPNNLSKYRCKNLIIPLHFAPSSLSVCCSSRESSTAVLSSDRSLDGENREASEEVLRVRRPVMEFTGEDSGDGEEAEDESSSVIELGLAEIAKKMPIFEPENRVDSSALERPLIINLDLALYKAKMMARNFLYDEARQVLQKRVIWLGKCIDKWPEDGRAYVALGKMLSKQMKAADARAVYERGCQATQGENSYIWQCWAVLESRMGNIRKARELFDAATVANKKHIAAWHGWAVLELKQGNLKKARNLLAKGLKYCGGNEYIYQTLALLEAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQRENNLLARQLFEKAIQASPKNRFAWHIWGLFEANIGNIEKGRKLLKIGHVLNPRDPVLLQSLGLLEYKNSSASLARVLFRRASELDPKHQPVWIAWGWMEWKEGNIGKARELYQRALLIDSASESAARCLQAWGVLEQRAGNLSAARRLYRSSLSINSQSYVTWMTWAALEDDQGNAIRAEEIRNLYFQQRTEVVDDASWVMGILDVIDPALDSIKRLLKLEQDPFAMSRVADVGARNASLDDSAASSSVADSETGFDLDAFMMKKLSIDTSKLEIQLETTRPKRFKYQRSQMRSENRPEMAVSESQRTASSST 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 984673 989389 + Cp4.1LG08g05370.1 Cpe08g00151 473117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00151 641 MobiDBLite consensus disorder prediction 612 641 - -
Cpe08g00151 641 SUPERFAMILY TPR-like 334 521 IPR011990 GO:0005515
Cpe08g00151 641 Gene3D Tetratricopeptide repeat domain 137 383 IPR011990 GO:0005515
Cpe08g00151 641 Gene3D Tetratricopeptide repeat domain 384 524 IPR011990 GO:0005515
Cpe08g00151 641 MobiDBLite consensus disorder prediction 622 641 - -
Cpe08g00151 641 SMART hat_new_1 363 395 IPR003107 GO:0006396
Cpe08g00151 641 SMART hat_new_1 295 327 IPR003107 GO:0006396
Cpe08g00151 641 SMART hat_new_1 468 500 IPR003107 GO:0006396
Cpe08g00151 641 SMART hat_new_1 397 429 IPR003107 GO:0006396
Cpe08g00151 641 SMART hat_new_1 329 361 IPR003107 GO:0006396
Cpe08g00151 641 SMART hat_new_1 261 293 IPR003107 GO:0006396
Cpe08g00151 641 SMART hat_new_1 192 225 IPR003107 GO:0006396
Cpe08g00151 641 SMART hat_new_1 431 466 IPR003107 GO:0006396
Cpe08g00151 641 SMART hat_new_1 227 259 IPR003107 GO:0006396
Cpe08g00151 641 SMART tpr_5 383 416 IPR019734 GO:0005515
Cpe08g00151 641 SMART tpr_5 281 314 IPR019734 GO:0005515
Cpe08g00151 641 SMART tpr_5 213 246 IPR019734 GO:0005515
Cpe08g00151 641 SMART tpr_5 315 348 IPR019734 GO:0005515
Cpe08g00151 641 SMART tpr_5 454 487 IPR019734 GO:0005515
Cpe08g00151 641 SMART tpr_5 247 280 IPR019734 GO:0005515
Cpe08g00151 641 SMART tpr_5 178 211 IPR019734 GO:0005515
Cpe08g00151 641 SMART tpr_5 417 450 IPR019734 GO:0005515
Cpe08g00151 641 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 6 622 IPR044624 GO:0003729|GO:0006397
Cpe08g00151 641 Pfam Tetratricopeptide repeat 287 348 - -
Cpe08g00151 641 SUPERFAMILY TPR-like 153 393 IPR011990 GO:0005515
Cpe08g00151 641 ProSiteProfiles TPR repeat profile. 281 314 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00151 - - - csv:101215572 1056.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00151 Cpe-Chr8:984673 Cpe20g00714 Cpe-Chr20:6068317 3.56E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g70 . . . . . . . . . . Cma06g01562 . Car06g01327 . Sed02g1137 Cpe08g00151 . Bhi01g01088 Tan10g1075 Cmetu06g0442 . Hepe05g1383 . Lcy11g1338 . . . . . . . . . Cone7ag0100 . Lsi05g01595 . . Cme06g00788 . Blo07g00145 Bda11g00502 . . Bpe13g00695 . . . Cmo06g01559 . . . . . . . . . . . . . . Cla05g00705 Cam05g0772 Cec05g0780 Cco05g0773 Clacu05g0762 Cmu05g0728 Cre05g0802 . Csa03g01517 Chy06g00754 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011618 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00151 Cpe_Chr08 FPKM 0.092228 0.433871 0.0 0.0 0.688898 0.148945 0.686752 0.058405 0.0 0.0