Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00155 ATGACTAATATGGCTCTTCGAAAGTTTGTTTATCATACACCTTCCATTAACTTGAAATGTTCAAGTCTCCCCATTAAGGCGCATCAGCAAACTCAATTTGAAGAACTTGAAACTAACCAGACGTCGGAGCCTGATGTAGAAATTGACCTTAGAGAAGTTTATTTTCTTATCATGCACTTTCTTTCATCTGGGCCATGTCATAGAACTTGTGGGCTGCTCTGGGATGAGCTTTTCGAACATCAGCTTTTACCCCGACGATATCATGCTTGGTTTTCTAGAAATGGGATGCAAAGTGGGCATGAAAATGACGATGGCTTGTCATTTCCTTTAAAGTACCAACACTTGGTGGAGAGGTATTCACATGTCGATAAGGACCACCTGATAAAACTTTTGAAGCAATTGATGCTTAACAAGGCCTCTCCATCTAGAGGTATGAATGGTGCAATTGCTCCAAATGCAGCTGACGTGCCTACATTATTAGGAACGGGCACATTTTCACTTCTGAGCTATGATAAAAATGAGGGAGCTAGCAAGCCAAGTGGTCCCCCAGCACACATGCGTTGGCCTCATATGAAAGCTGATTCTGTTCGTGGATTAAGTTTGAGAGAAATTGGAGGTGGTTTCTCCCGACATCAACGTGCACCTTCTGTACGTTCAGCATGTTATGCAATTGCTAAGCCGTCAACAATGGTGCAGAAAATGCAAAACATAAAGAGGCTACGAGGGCATCGGAATGCTGTCTATTGTGCAATTTTTGATCGCATGGGAAGATATGTGATAACTGGTTCAGATGATCGCCTTGTAAAGATTTGGTCAATGGAAACTGCATATTGCTTGGCAAGCTGCCGAGGACATGAGGGTGATATCACTGATCTGGCTGTAAGTTCTAACAATGCTGTGGTGGCATCATCTTCAAATGATTTTGTTATCCGTGTTTGGCGCTTGCCTGATGGGCTACCAATTTCAGTCTTGCGAGGACATACTGGTGCTATTACTGCCATTGCCTTCAGTCCCAGAGCTGCATATCAGCTTCTTTCATCGTCAGACGATGGAACATGTAGGATATGGGATGCTCGGAGCTCTTCTCAAAGTGCTCCTCGGATTTATGTTCCAAGGCCTTCGGACTCTGTGATTGCTGCAGCAAGAAACAGTGGCTCTTCCGTGAGTACTCTTCCTCAGAGCCATCAAATATTTTGCTGTGCATTTAATGCTTGTGGAACTATTTTTGTTACTGGTAGTTCTGACACTTTAGCCAGGGTATGGAGTGCCTATAAAGGAAATAATGATAACCCAGACCAACCAAATCATGAGATTGATGTATTGGCTGGCCATGAGAATGATGTCAACTATGTGCAATTCAGTGGATGTGCGGTAGCATCAAGATTTACAACAACTGACATTGTGAAGGAAGACAATGTTCACAAGTTCAAAAACTCCTGGTTCACTTACGACAATATAGTTACTTGTTCTCGTGATGGCAGTGCAATTATTTGGGTTCCAAGATCACGTAGGTCACATGGGAAGGTTGGCCGCTGGACCCGTGCGTACCATTTAAAAGTGCCACCTCCACCCATGCCTCCACAGCCTGCTCGAGGCGGTCCTCGTCAGAGGATTCTTCCTACTCCTCGTGGTGTAAATATGATAATTTGGAGTCTAGACAACCGTTTTGTCTTAGCAGCTATAATGGATTGTAGAATTTGTGTTTGGAATGCTTCGGATGGAAGCTTAGTGCACTCTTTGACTGGTCATACTGAATCTACGTATGTACTCGATGTTCATCCTTCTAATCCAAGGATTGCTATGAGTGCTGGATATGATGGGAAAACAATAGTTTGGGATATTTGGGAAGGCACACCAATTCGGATATATGAAATTTCTCATTTCAAACTGGTCGATGGCAAGTTTTCATCAGATGGGACATCAATTATACTTTCAGATGATGTTGGACAGCTATATATATTAAGCACAGGGCAAGGAGAATCCCAACAGGATGCCAAGTATGATCAGTTCTTTCTCGGTGACTATCGCCCACTTATTCAGGATCCTTCTGGCAATGTCGTCGACCAGGAAACTCAACTCACTACTTACAGGCGGAATTTGCAAGATCTCCTTTCTGACTCAGGCATGATACCTTATCCAGAACCTTATCAGACTGCATACCAGCAAAGGCGTTTGGGTGCCATGGGTCTTGAATGGCGTCCATCTTCTCTAAAACTTTCTGTTGGGCCCGACTTCAATCTCGACCCAGATTACCAATTGTTGCCTTTGGCAGACTTGGACATGTTGATTGAACCATTGCCTGAGATTGTAGATGCAATGGATTGGGGACCAGAAAATGAAGTACAAAGCGACGATACCGATTCAGAATATAATGTCCCTGAAGATTATTCTACTGGTGGGGAGCAAAGAAGTCTAAATTCGAACTGCTCAACGGATCCAGAATGCAGCTCTGAAGACACAGGGATCGACGATGCCCCTGCTGATGGTCTTCGAAGATCAAATAGGAAAAAACAGAAAGCAGACATGGAGGTCATGACTTCTTCAGGAAGGCGTGTTAAAAGACGGAATATGGACGAGTATGAAGGTGATATAGTTAGGAGTTCCAGAAGCCAGAAGTCGAAATCTGGCCACAAGCCTTCCAAAAAGAAATCAGCATCTAAGTTGTTAAGACCTCAAAGAGCTGCTGCACGTAATGCCCGTAATTGGATATCATCATTTAAGGGAAAATCTACAGATGGAGAAGATGAATACGACTCGGGAGGTGATTGCTCAGAAAGTGAATCTACGTTAGAAGACTCAGACATCGAGAGCGATGAATACAAAAGGTCATTGCAAAACAGAAATAAGCATTCAAAAGGGAAAGTATTCGTAGATGGAACCGAGGAGATGACAAAATCTCTTGATGTTCCTGAATCTCGTGTGGATATTGGAAACCGAAAGAAGTTGATTCTTAAATTCTCCCTTCGGAATCCGAATAAGGTCGATCCTCCTTTAAACACAACACTTACTTGTTCCAACATGGCTGTTGTGGCTAGCTCATCATCAAGGTCCCCAAAGGAAGATATTGAAACCAGTCAGATTCTTATGAGACCAGAGAGGCAATTTGGAAATACTGATGGACATTCTGATCTGACCGAGGTCTACACAAATGGGAACATAAGATGGGGAGGTTCCAGAGTTCGTTCATCGAAGCGCATAAGATTAGGCGAAACTATGCCTTCTGAGGCATATGCTGCAATGTCTAGTTCGTTTCCCGATGGCGATCATAATGAAAATGAGAACGACGTTCGTGAATCTTTAGAACAAGAAAATCATTTTGGTACTCCATCCCCCCATTCAAAGATGGAGAATTATTGTGCAGAGAAAATGGGCGATGGGGATGATGATGCTTCTGGGCAATCTCAGGAGGTTGTCAACGGTGGAGACGTTAAACGTGTCAACAGTAAGTCGAGTGATCACGATGATTCAAATAATTTGAATTTAATGTTTCCTTCAGATGCAACGACCACATCGGTTCAAAATGGGACCACTGCTTCTGAGCAAACTGGAAATATTGCACCAATGCGTGCAAAGATAAGGTTGAGGAGTGTTTCTTTGGACCCTGAACATTCTCTGAAGCACAAAATAGAATCCTTAGATGAAAGCTCAAAGAACGATGAATACAATACGGTGTTCGGAAGCCCTCGGCATCTGAATGGGCTGCAGGAGGATGTCATGAATGGAGCTTATTCTGATCATAGAAATGATTCCTCACAAGATATAGATACTCCAAATGATGAAAAACTAATGTCAACCTTGTGCAACTCTGATGAGTTGCAAGCAGTAGAGACTAACAAAATGTTCACTGCTGTTTATAGAAGATCAAAGTCGAACAAAGGAAAGAGTAATGCAGAAAGCAACGGTTGTGGCTCAGGCGAAAATGCTTCGGGCAACATTAGTCTACCTGCTGAAGCAGACAATCACAAAAGTATGCCTCGTAAGACACGATCTTCGAGGTTTAAGGATGCCTCATATGATCTAAATAATGTGGGTGACAATCTTAAATCGGACGAAGATCAGGAATCTGAACATAGATCAAGACGTTCTGCAAACAGATCCCATATACCAAATGAAGAGTGGGGATCAAGCTCAAGGATGACAGTTGGATCGAGATCCACTCGTAACAGGAGGAGTAGTTTTACTCAAGACATAAATCCTGTGGAAAGAAGAAAGTCAGTTCAATATGCCCGAAAAGGATCGTGGTTAATGATGCCCGCACATGAGGGTGGCTCCAGATATATTCCCCAACTTGGCGACGAAGTTGCGTATTTGAGGCAGGGCCATCAAGAATACATAGATCACTGTTGTACAAATTACTATCACACAAAAGACACCGGACCTTGGACCTCAATCCGGGGACCTGTACGAGCGGTTGAGTTCTGTAAGGTTGTCGAGCTTGTTTATTCTACTTCTGCAGGTTCTGGAGATAGTTGCTGTAAAATGCTACTCAAGTTCATAGATCCTACTTCCCATGTATACCTCCAATCTTTGAAGTTAACTCTGCCCGAGTTGACTAGTTTCCCCGACTTCTTAGTCGAAAGAACTCGGTTTGAAGCGGCAATGCAGAGGAATTGGACATTCAGGGATAAGTGCAAAGTGTGGTGGAAAAACGACGTCGGAGTAGATGGTAGTTGGTGGGATGGTCGGATTGTCTCCGTGCAGGCAAAATCTTTGGAGTATCCAGAAAGTCCTTGGGAGAGGTACACAATTAAGTATAGGAGTGATCCTGCAGAACCACATTTACATAGTCCTTGGGAGCTGTATGATACTGTTACTCAGTGGGATCAGCCTCGAATAGACGACGAAAACAAAGCGAAGTTGTTAACTGCCTTCGACCAATTAACGTCGACTTCTATGCAGGGTCGTTACGGGATTCAAGATTTGATGCTTCTCGCACGAAAGACACAATACAAGAACAGGTTTCCTGTACCATTGTGCCTTGAGATAATCCAGGAAAGATTACAGAATGATTACTACCGAAGCTTGGAAGCATTGAAGCACGACTTCATGGTAATGCTATCAAATTTCGAGTCATTCGTGGCAAAGAATGAAGACATGTCGAAGAAAATTAGACGATTGTCGGACTGGTTTAGTCGCAACGTATCACCTTTGTAG 5154 43.27 MTNMALRKFVYHTPSINLKCSSLPIKAHQQTQFEELETNQTSEPDVEIDLREVYFLIMHFLSSGPCHRTCGLLWDELFEHQLLPRRYHAWFSRNGMQSGHENDDGLSFPLKYQHLVERYSHVDKDHLIKLLKQLMLNKASPSRGMNGAIAPNAADVPTLLGTGTFSLLSYDKNEGASKPSGPPAHMRWPHMKADSVRGLSLREIGGGFSRHQRAPSVRSACYAIAKPSTMVQKMQNIKRLRGHRNAVYCAIFDRMGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVVASSSNDFVIRVWRLPDGLPISVLRGHTGAITAIAFSPRAAYQLLSSSDDGTCRIWDARSSSQSAPRIYVPRPSDSVIAAARNSGSSVSTLPQSHQIFCCAFNACGTIFVTGSSDTLARVWSAYKGNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDIVKEDNVHKFKNSWFTYDNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQRILPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPSNPRIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESQQDAKYDQFFLGDYRPLIQDPSGNVVDQETQLTTYRRNLQDLLSDSGMIPYPEPYQTAYQQRRLGAMGLEWRPSSLKLSVGPDFNLDPDYQLLPLADLDMLIEPLPEIVDAMDWGPENEVQSDDTDSEYNVPEDYSTGGEQRSLNSNCSTDPECSSEDTGIDDAPADGLRRSNRKKQKADMEVMTSSGRRVKRRNMDEYEGDIVRSSRSQKSKSGHKPSKKKSASKLLRPQRAAARNARNWISSFKGKSTDGEDEYDSGGDCSESESTLEDSDIESDEYKRSLQNRNKHSKGKVFVDGTEEMTKSLDVPESRVDIGNRKKLILKFSLRNPNKVDPPLNTTLTCSNMAVVASSSSRSPKEDIETSQILMRPERQFGNTDGHSDLTEVYTNGNIRWGGSRVRSSKRIRLGETMPSEAYAAMSSSFPDGDHNENENDVRESLEQENHFGTPSPHSKMENYCAEKMGDGDDDASGQSQEVVNGGDVKRVNSKSSDHDDSNNLNLMFPSDATTTSVQNGTTASEQTGNIAPMRAKIRLRSVSLDPEHSLKHKIESLDESSKNDEYNTVFGSPRHLNGLQEDVMNGAYSDHRNDSSQDIDTPNDEKLMSTLCNSDELQAVETNKMFTAVYRRSKSNKGKSNAESNGCGSGENASGNISLPAEADNHKSMPRKTRSSRFKDASYDLNNVGDNLKSDEDQESEHRSRRSANRSHIPNEEWGSSSRMTVGSRSTRNRRSSFTQDINPVERRKSVQYARKGSWLMMPAHEGGSRYIPQLGDEVAYLRQGHQEYIDHCCTNYYHTKDTGPWTSIRGPVRAVEFCKVVELVYSTSAGSGDSCCKMLLKFIDPTSHVYLQSLKLTLPELTSFPDFLVERTRFEAAMQRNWTFRDKCKVWWKNDVGVDGSWWDGRIVSVQAKSLEYPESPWERYTIKYRSDPAEPHLHSPWELYDTVTQWDQPRIDDENKAKLLTAFDQLTSTSMQGRYGIQDLMLLARKTQYKNRFPVPLCLEIIQERLQNDYYRSLEALKHDFMVMLSNFESFVAKNEDMSKKIRRLSDWFSRNVSPL 1717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1008171 1020248 + Cp4.1LG08g05220.1 Cpe08g00155 473121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00155 1717 MobiDBLite consensus disorder prediction 1079 1160 - -
Cpe08g00155 1717 MobiDBLite consensus disorder prediction 1320 1334 - -
Cpe08g00155 1717 MobiDBLite consensus disorder prediction 935 957 - -
Cpe08g00155 1717 Pfam Bromodomain 1648 1702 IPR001487 GO:0005515
Cpe08g00155 1717 MobiDBLite consensus disorder prediction 1345 1367 - -
Cpe08g00155 1717 Gene3D - 394 525 IPR015943 GO:0005515
Cpe08g00155 1717 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 622 IPR001680 GO:0005515
Cpe08g00155 1717 MobiDBLite consensus disorder prediction 824 870 - -
Cpe08g00155 1717 Gene3D - 209 393 IPR015943 GO:0005515
Cpe08g00155 1717 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 323 IPR001680 GO:0005515
Cpe08g00155 1717 ProSitePatterns Trp-Asp (WD) repeats signature. 600 614 IPR019775 -
Cpe08g00155 1717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 240 275 - -
Cpe08g00155 1717 Gene3D - 535 669 IPR015943 GO:0005515
Cpe08g00155 1717 MobiDBLite consensus disorder prediction 777 957 - -
Cpe08g00155 1717 MobiDBLite consensus disorder prediction 917 934 - -
Cpe08g00155 1717 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 42 1716 - -
Cpe08g00155 1717 MobiDBLite consensus disorder prediction 871 888 - -
Cpe08g00155 1717 CDD WD40 236 613 - -
Cpe08g00155 1717 SMART bromo_6 1613 1716 IPR001487 GO:0005515
Cpe08g00155 1717 MobiDBLite consensus disorder prediction 1287 1316 - -
Cpe08g00155 1717 SMART WD40_4 434 499 IPR001680 GO:0005515
Cpe08g00155 1717 SMART WD40_4 384 422 IPR001680 GO:0005515
Cpe08g00155 1717 SMART WD40_4 275 314 IPR001680 GO:0005515
Cpe08g00155 1717 SMART WD40_4 233 272 IPR001680 GO:0005515
Cpe08g00155 1717 SMART WD40_4 573 613 IPR001680 GO:0005515
Cpe08g00155 1717 SMART WD40_4 532 570 IPR001680 GO:0005515
Cpe08g00155 1717 SMART WD40_4 317 357 IPR001680 GO:0005515
Cpe08g00155 1717 SUPERFAMILY WD40 repeat-like 231 656 IPR036322 GO:0005515
Cpe08g00155 1717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 282 315 - -
Cpe08g00155 1717 MobiDBLite consensus disorder prediction 1287 1399 - -
Cpe08g00155 1717 ProSiteProfiles Trp-Asp (WD) repeats profile. 240 281 IPR001680 GO:0005515
Cpe08g00155 1717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 324 360 - -
Cpe08g00155 1717 MobiDBLite consensus disorder prediction 792 816 - -
Cpe08g00155 1717 PANTHER WD REPEAT DOMAIN 9 42 1716 - -
Cpe08g00155 1717 MobiDBLite consensus disorder prediction 1368 1399 - -
Cpe08g00155 1717 ProSitePatterns Trp-Asp (WD) repeats signature. 344 358 IPR019775 -
Cpe08g00155 1717 SUPERFAMILY Bromodomain 1649 1714 IPR036427 GO:0005515
Cpe08g00155 1717 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 366 IPR001680 GO:0005515
Cpe08g00155 1717 MobiDBLite consensus disorder prediction 1088 1102 - -
Cpe08g00155 1717 Pfam WD domain, G-beta repeat 278 313 IPR001680 GO:0005515
Cpe08g00155 1717 Pfam WD domain, G-beta repeat 320 357 IPR001680 GO:0005515
Cpe08g00155 1717 Pfam WD domain, G-beta repeat 235 272 IPR001680 GO:0005515
Cpe08g00155 1717 Pfam WD domain, G-beta repeat 394 422 IPR001680 GO:0005515
Cpe08g00155 1717 Pfam WD domain, G-beta repeat 574 613 IPR001680 GO:0005515
Cpe08g00155 1717 CDD Bromo_WDR9_I_like 1593 1715 - -
Cpe08g00155 1717 Gene3D - 1630 1717 IPR036427 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00155 K11797 PHIP, DCAF14; PH-interacting protein - csv:101214610 3001.08
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01333 Cpe08g00155 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00155 Cpe-Chr8:1008171 Cpe03g00852 Cpe-Chr3:5351688 1.22E-07 dispersed
Cpe03g01333 Cpe-Chr3:10825398 Cpe08g00155 Cpe-Chr8:1008171 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00155 Cpe_Chr08 FPKM 82.851608 87.252586 68.282478 73.407417 127.98436 109.789268 124.424278 78.824333 81.132645 78.659897