Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00156 ATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGGGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGATACTCAAGGTTGTCACTTTCACTCGTCACCCTGTTAAGTGTTCCTGTCGTCTTATCATCTCTGTTGTTAGCTTACCCTTCTCTGAATTTGAAGGACATACTATCCCATTGTTCTTGGTTGCTTTTGTAGTTCATTTCGGTATAATAGTTTTCAGGAAGGAACAATTCAATGTATGTTTTCCTGATGGATCGTTGTTGGAAACTTCCTTTCTATTTTCTTGTAGCCGAGTAGCTTTTATTTTTGCCTACTGGAAGATAGACCTGTATCTGTACACTGAAATCAATATCCTCCCTTCTTTTCTTCTGATTCGACTTACTGATACTCCCTTCCATGAAGTTGCTGACAATAACTGTGTCTATAGGAATGAGATTCATCACGCCGTAGGGGAACGCACTCAAGTTCTGCAAGATGTTGCTGCGGATCCAACACTCCCTCGCACAAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGGGAGGAAGGTATGACATTATTCTTCGTTTGCTGCAATCCAAATTGTGGCCACAGGTGGAGAGATTGA 678 42.92 MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQILKVVTFTRHPVKCSCRLIISVVSLPFSEFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAYWKIDLYLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1018527 1022326 - Cp4.1LG08g05130.1 Cpe08g00156 473122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00156 225 SMART Cys4_2 185 225 IPR001222 GO:0003676|GO:0006351|GO:0008270
Cpe08g00156 225 SMART rpol9cneu 5 57 IPR001529 GO:0006351
Cpe08g00156 225 CDD Zn-ribbon_RPB9 175 224 IPR034012 GO:0006379
Cpe08g00156 225 SUPERFAMILY Zinc beta-ribbon 163 225 - -
Cpe08g00156 225 PANTHER DNA-DIRECTED RNA POLYMERASE 138 225 IPR012164 GO:0006351
Cpe08g00156 225 PANTHER DNA-DIRECTED RNA POLYMERASE 1 36 IPR012164 GO:0006351
Cpe08g00156 225 Gene3D - 158 225 - -
Cpe08g00156 225 ProSitePatterns RNA polymerases M / 15 Kd subunits signature. 6 32 IPR019761 -
Cpe08g00156 225 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 138 225 - -
Cpe08g00156 225 Pfam Transcription factor S-II (TFIIS) 186 224 IPR001222 GO:0003676|GO:0006351|GO:0008270
Cpe08g00156 225 Gene3D - 1 44 - -
Cpe08g00156 225 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 1 36 - -
Cpe08g00156 225 Pfam RNA polymerases M/15 Kd subunit 4 33 IPR001529 GO:0006351
Cpe08g00156 225 SUPERFAMILY Zinc beta-ribbon 1 36 - -
Cpe08g00156 225 ProSiteProfiles Zinc finger TFIIS-type profile. 183 224 IPR001222 GO:0003676|GO:0006351|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00156 K03017 RPB9, POLR2I; DNA-directed RNA polymerase II subunit RPB9 - csv:101211228 176.407
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01334 Cpe-Chr3:10840114 Cpe08g00156 Cpe-Chr8:1018527 1.16E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g85 . . . . . . . . . . Cma06g01557 Cma14g01595 Car06g01322 . Sed02g1140 Cpe08g00156 . Bhi01g01081 Tan10g1067 Cmetu06g1826 . Hepe05g1391 . Lcy11g1347 . . . . . . . Cone14ag0724 Cone15ag0734 . . Lsi05g01585 . . Cme06g00780 . Blo07g00154 Bda11g00508 . . Bpe13g00690 . Bma06g01474 . . . . . . . . . . . . . . . . Cla05g00696 Cam05g0763 Cec05g0771 Cco05g0766 Clacu05g0754 Cmu05g0719 Cre05g0794 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011015 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 0 1 2 1 1 0 1 2 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00156 Cpe_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0