Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00165 ATGTCTACGGCGAGTTCGAGCTCTGTAAGGAAACCTAGTGAATCTGTTCCTCTCCAGTTTCCGGCTGGCCTTCGTGTTCTTGTTGTTGATGATGATCCTACCTGCCTTATGATCTTGGAGAAGATGCTTCGGATTTGTCGCTACGAAGTAACGAAATGTAGTCGAGCTGAGGATGCGTTATCGGTCCTCAGACGTTACAAGAACGGGTTCGATATCGTTTTGAGCGATGTTCATATGCCAGATATGGATGGATTCAAGCTTCTGGAATGCATTGGACTTGAAATGGACTTGCCTGTGATTATGATGTCGGTGGATGACGGGAAAAACGTTGTTATGAAGGGAGTGACTCATGGTGCTTGTGACTACTTAATAAAACCTGTTCGAATTGAAGCGTTGAAGAACATATGGCAGCATGTCGTTCGTAAGCGGAAGAATGAATGGAAGGACTTGGAGCAATCTGGTGTTGAGGACGTCGATCGACAGCAAAAGGCGAATGAAGAACCAGATTATTCATCTTCTGCTAATGAAGGAAGTTGGAGGAACTCGAAGAGGAGGAAGGAGGACATAGACGATGCTGAGGAGAGGGATGACTCATCGACCCTAAAAAAACCGAGGGTTGTTTGGTCCGTTGAGCTTCATCAACAGTTCGTGGGTGCTGTTAATCAACTAGGAATCGAGAAGGCTGTTCCGAAGAAGATTCTCGAATTGATGAATGTTCCTGGACTCACTAGAGAAAACGTTGCCAGCCATCTTCAGAAATATCGCCTGTACCTGAGAAGAGTAAGTGGAATGACACTGCAACAGAGTAATTTGAACAACACATTCATGAGTGCCCAAGAAGCATTTGGCTCGACGTTGAACGGGCTTGATCTTCAAACGCTCGCTGCTGCTGGTCAACTCCAGCCACAGAGCCTTGCTACGCTCCAAGCAGCGGGATTTGGTCGGTCTACAGCGAAATCAGGCATGCCTATGCCTCTTGTTGACCAAAGGAACCACTTTTTTAGCTTTGAAAATCCGAAGTTGAGATTCAGTGATGGACAACAGCCACATTTGAACGGTAGTAAACCGATGAATCTTCTTCATGGAATTCCGACAACGATGGAGCCGAAACAGCTAGCTAATCTGCAGCAGCACTCTGCACAATCTCATGGAAACATGACAATGCAAGCTAGTGCCCAAGGAGGCCAAACTAGCTCTCAACTGATGCAGACACCTCAACCACAAGCTCGACCACAGATCCTAAATGAATGTACAGCAACGAGTGTTACAAGGCTTCCACCGACAATACAGCAGTCGATTTTGCCGAATGGAACCGCTGGTTCGGTTTTGGCTAGGAATGGATTTACGACTAACAGCAGAGGTGGAGGCTACAATCTAATTTCACCAGCCTCAACAATGTCAAATTTTCCCATGAACCAAACTGCAGAATTGCCTGGTAACAGTTTTCCACTTCAAAGTACACCAGGGATGTCGAGTATTGTACCAAAGGGAAGATTCCCGGACGAGGTTAACTCGGTCTCGGATATTAAAGGATCTGACGGTTTCGTTCCGAGCTATGATATGTTTAGGGATCTGCATCCTCAGAAGCCAGATTGGGACTTGCAGCACGTAGGCGTGACCTTCGATGCATCGCAAGGTAGTCTTGACATTCCGACCGCAGCATTTGGTCATCAAGGGTATGCCTCTAGCCAACAAAATGGACATAACAGGCACACATCTACGGTAGGCAAGGCCATGTTCTTGTTGGAAGAAGGAAGTGACAATGGGAATGCCCAAAGTATGGGTCAACAACTCAATCCTCTTTTCGATGATGGCTCGCAGCAGGGAAGCATTGCAACAGCTGAAAGTGAGTTGGAATGGTTTCATCATAATACTCCTGTTTAA 1884 46.44 MSTASSSSVRKPSESVPLQFPAGLRVLVVDDDPTCLMILEKMLRICRYEVTKCSRAEDALSVLRRYKNGFDIVLSDVHMPDMDGFKLLECIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGVEDVDRQQKANEEPDYSSSANEGSWRNSKRRKEDIDDAEERDDSSTLKKPRVVWSVELHQQFVGAVNQLGIEKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRVSGMTLQQSNLNNTFMSAQEAFGSTLNGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKSGMPMPLVDQRNHFFSFENPKLRFSDGQQPHLNGSKPMNLLHGIPTTMEPKQLANLQQHSAQSHGNMTMQASAQGGQTSSQLMQTPQPQARPQILNECTATSVTRLPPTIQQSILPNGTAGSVLARNGFTTNSRGGGYNLISPASTMSNFPMNQTAELPGNSFPLQSTPGMSSIVPKGRFPDEVNSVSDIKGSDGFVPSYDMFRDLHPQKPDWDLQHVGVTFDASQGSLDIPTAAFGHQGYASSQQNGHNRHTSTVGKAMFLLEEGSDNGNAQSMGQQLNPLFDDGSQQGSIATAESELEWFHHNTPV 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1065824 1069433 - Cp4.1LG08g05110.1 Cpe08g00165 473131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00165 627 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 259 IPR017930 -
Cpe08g00165 627 SUPERFAMILY Homeodomain-like 200 260 IPR009057 -
Cpe08g00165 627 PIRSF RR_ARR_type-B 4 620 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cpe08g00165 627 MobiDBLite consensus disorder prediction 179 200 - -
Cpe08g00165 627 Pfam Myb-like DNA-binding domain 205 255 IPR001005 -
Cpe08g00165 627 SMART REC_2 24 136 IPR001789 GO:0000160
Cpe08g00165 627 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 575 - -
Cpe08g00165 627 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Cpe08g00165 627 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 575 IPR045279 GO:0009736
Cpe08g00165 627 Gene3D - 200 262 - -
Cpe08g00165 627 Gene3D - 24 160 - -
Cpe08g00165 627 MobiDBLite consensus disorder prediction 151 200 - -
Cpe08g00165 627 CDD REC_typeB_ARR-like 26 140 - -
Cpe08g00165 627 SUPERFAMILY CheY-like 23 148 IPR011006 -
Cpe08g00165 627 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Cpe08g00165 627 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677
Cpe08g00165 627 MobiDBLite consensus disorder prediction 151 166 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g00165 Cpe17g00047 CCT
Cpe08g00165 Cpe12g00300 CCT
Cpe08g00165 Cpe12g00300 ECH
Cpe08g00165 Cpe17g00047 ECH
Cpe03g01344 Cpe08g00165 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01239 Cpe-Chr4:10362146 Cpe08g00165 Cpe-Chr8:1065824 6.48E-108 dispersed
Cpe07g01132 Cpe-Chr7:9932833 Cpe08g00165 Cpe-Chr8:1065824 3.61E-81 dispersed
Cpe08g00165 Cpe-Chr8:1065824 Cpe11g00049 Cpe-Chr11:251288 6.65E-95 dispersed
Cpe09g00111 Cpe-Chr9:646470 Cpe08g00165 Cpe-Chr8:1065824 2.13E-41 dispersed
Cpe14g00128 Cpe-Chr14:689422 Cpe08g00165 Cpe-Chr8:1065824 5.13E-37 dispersed
Cpe12g00300 Cpe-Chr12:1997163 Cpe08g00165 Cpe-Chr8:1065824 0 wgd
Cpe17g00047 Cpe-Chr17:301283 Cpe08g00165 Cpe-Chr8:1065824 0 wgd
Cpe17g00768 Cpe-Chr17:6046302 Cpe08g00165 Cpe-Chr8:1065824 2.20E-13 wgd
Cpe03g01344 Cpe-Chr3:10903145 Cpe08g00165 Cpe-Chr8:1065824 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49824 PF00072 Response_reg 9.70E-22 CL0304 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00165 - K14491 csv:101209013 1088.56