Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00179 ATGGTATTGTTTGTCTGCGTGATGGTTGCTGCCATGGGAGCTCCATTAATGGTGGTGGAAGCTCAGCTTGGGTCCATTGGCAGTCTTCTTAGCCTTACCAGAATCCAAGGAACTGTCTTTTGCACTGCCAATGGCAACATCGGCACCAATGGCACCGCCACTCCTGCCTTCCCGAATGCAGCCGTGCAACTGCAATGTGGAAACGGAAACGTTGTGTCGACTGCAACAACAAACAGCGCGGGAGTGTTTTCGATTCTGTTAGATCCACTACAGCTCCTTCTCTCTTCACTCACCTCCAACTGTAGCGTCGTAGTGAACACGCCACTGTCGAGCTGCAACGCAACGTTACCCTCTGTCGGGAATTTGGTTTCGGCGTTGAATTTGGTCGGAATGACATTTCAGGGACTCCTCCGTATAACCAACATCATCCCCACGGGATTCATGTTCCAGCCATCTACATAA 462 50.87 MVLFVCVMVAAMGAPLMVVEAQLGSIGSLLSLTRIQGTVFCTANGNIGTNGTATPAFPNAAVQLQCGNGNVVSTATTNSAGVFSILLDPLQLLLSSLTSNCSVVVNTPLSSCNATLPSVGNLVSALNLVGMTFQGLLRITNIIPTGFMFQPST 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1232801 1233349 + Cp4.1LG08g04990.1 Cpe08g00179 473145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00179 153 Pfam Pollen protein Ole e 1 like 35 114 - -
Cpe08g00179 153 PANTHER POLLEN OLE E 1 ALLERGEN AND EXTENSIN FAMILY PROTEIN-RELATED 3 150 IPR040404 -
Cpe08g00179 153 Gene3D Immunoglobulins 30 129 IPR013783 -
Cpe08g00179 153 PANTHER POLLEN OLE E 1 ALLERGEN AND EXTENSIN FAMILY PROTEIN 3 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00179 - - - zju:107433147 186.422
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe08g00179 Cpe17g00029 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00029 Cpe-Chr17:196355 Cpe08g00179 Cpe-Chr8:1232801 1.04E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g181 Blo01g00071 . . . . . . . Cmo08g01205 . . . . . . Cpe08g00179 . . . . . . . . . . . . . . . . . Cone7ag0141 Cone4ag0145 . Csa06g01802 . . . . . . Bpe05g00833 . . . . . . . . . . . Cpe17g00029 Bhi12g02046 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003284 1 2 0 1 2 2 2 2 1 2 2 2 1 2 2 2 2 2 2 2 1 2 2 1 1 3 2 2 1 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00179 Cpe_Chr08 FPKM 28.593254 30.093483 32.170624 30.579435 17.606197 19.800678 17.211058 38.710972 34.453697 35.301514