Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00182 ATGCGTATGGAAGCCCAATATTCTTCTTCACATTCATACAGCTCGGCGATGAAGATGACTATCCCGCCGTCTCAACATGCCGACAATGACCGGAGCACCACCGAGCTTCGCGCCTTGGACTGCAACCTCACCTCCCTTTGCGACCACATCCAGATTGAGGGGTTTAATTCTGGCGCATTCTCTGACATTATCGTCCACGCCATGGGCTCCACGTACCGCCTTCATCGCTTAATTCTATCGCGCAGCTCTTACTTCAGTGGATATGCTGTTATGGATTTTGAATCTGCAACATCAATAGCCTACATTATGACTTGCAGGAACATGCTTCATGGGCCATGGAAAGAGGCCAGTGCTCCTGTTCTGACCTTGCACGTTGATGATAAGAATGTCAATGGGGAGGCAATTGCTATGGCGTTGGCATATATGTACGGACATCATCCTAAGTTGAATGACAATAATGCTTTTCGTGTTCTTGCTGCTGCTTCCTTTCTCGACCTTCAGGATTTGTGTGCGATATGTACAGATTTTATTATAGCCGAACTGTGGACTTCAAATTTCCTGGTTTATCAGGTGTTTGCGGAGAGCCAAGATTATGGAATACACGGAGAACGTGTGAGAAACGCTTGCTGGGGTTACCTTTGTCAAAGTGGTGCCATGGAATTGAAAGAGGTACTTCCAAAGCTTTCATCTCAGACGTTGTATGCTTTGCTGACATCCGATGAATTATGGGTTCCTAGTGAAGAGAGACGGTTTGAACTTGCATTGTTTACGTTCCTTGCTAAAGGGGCCCATTGCAAGGAGGAACCTTCTGAACCAGGTTGTTCCAGTTCTGAGATCGAAAATTCCAAGACACGGGAAAATCGTTCAATGGATTCCACTAATGTAGGGTTGGAATCTGAGCTAGGACATTTAAGTTTGAAAGATGGCCTAGAGGTCCATAAAGGTGCTCATAATCTTCTTGTTCAGCTTCCCGACTGTGTGGTTGACTTCCAAACAGGGGCTTGCAGCTCTAAACAGAAGATGCAACAAGCTACATACTCACAGTCAAATTTAGAAGCACCATTTTTGTGCAACGCAGAAGGGTCATCATCTTTGAATAATTCATTCTCCGAGATGAATGGAATTTTAAGCTCATGTTCTTATATTAATTTACCAGTTACTGTTGGAGTAAGTGGACTTGGTGCAAGTGGGATTGCTATGGAAGGGCCATCAGAAGAAGGCTGCTATCAATTGGATAACAATACTTGGCTTACTAGGGACCAAACAAGCCATTGTGCCTCTGTGAACTCTTCTACCAATGGACTCCCTTCAAATGATTGGGGAAGATGCGGCATGCCTGCTGTTTCATGGGGAGGCAGGGTCGTAGGTAGAAGGCAGCTTAAAAGTTACGCGAAAGGCAACTTAAGTGCAACGGGAGAGGATTATGATGTGTTCGATAGTTTATTTGAAGGGGGTTCACTTTTGTACTGCAATATGACTTTTGAAGCTCTTCTCAATATGAGAAAACAACTTGAAGAGTTTGGTTTCCCTTGCAAAGCTGTAAACGATGGTCTTTGGCTGCAGATGCTTTTAAGGCAAAGGGTACAAGAGATTGTTGCTGATACATGCAAAAGTTGCTGCCTTACAAGTATAGCATGTGCATGCAGGCAGCCGTTTGCATTTGCACGCGGAGTCAGTGCGTCAGGATATTATATCAATGAGCATGATCAGAATAGTTCTCCTGGAAGTGTGGGCAACATATATGTTGCAGAATCTTCTCAAGGTGAAGGAAATGGCCCTTTTAAACCTGTCCGAGTACATGTTAGGGGGCCAATTGAAGGGCTTGCTGGAATTGGACGTGGAGCCACTTTTGTGCCAGCGAGTGCTTGGCCTCCAACACGCTTTGTCTTCTCCCGTGTACCTATTGGCATGGGCAACAGAAATTGTCATCAGTCGCTTGCTAATGATGATTCAGAGGCTAGAGCCGAGCACAGTGGGGACTTGTCGGGAGATGGATTGACAGCATTGGTTGGTTTGAGCCAAGGAGGAAGCGGCGGTATGAATGCTCAGGGAGAACCAACAGAGAGAGGATATGAGATGGAACTGCAAAGCAGAATATCTGGAACCTCCATGGCAGGTCCAAGTGCCACTGGTATTCCTGTTCAGATGCTTCAAGCTCCAGATCATGCCCTTGGAATTGAGTGGGAGAATGAAAACAGTACAATTGCTTTAGATATGAAAACGCCTTTAAGTCACTTCCCTCCTTTTCGCTTTGGCGTACAATTTGAGGACGTTCATAGACTTAGTGATGGCCAAGTCAAGCATTCACCTGAGTTTTTCTATGCTGGTTCTCTATGGAAGGTTAGTGCTCAGGCTTTTAACGATGAAGACCCTCAAGGACGCCGAACACTAGGATTATTTCTTCACAGACGGAAGGCGGAAATATCTGATTCTTTGAGAAAGGTCCATATGTTTGTGGATTCTCGTGAAAAAGTCACTGCACGATATCAGTTGATATGTCCATCGAAGAGGGAGGTGATGGTGTTTGGCAACTTCAAACAAGCAGGAACTCTTCTACCGAAAGCTCCCAAGGGATGGGGTTGGCGGACCGCTCTCCTATTCAACGAGCTCGCCGATTTTCTTCAACATGGAGCCCTGAGGGTGGCTGCTGTCGTGCAGCTAGTTTGA 2667 45.78 MRMEAQYSSSHSYSSAMKMTIPPSQHADNDRSTTELRALDCNLTSLCDHIQIEGFNSGAFSDIIVHAMGSTYRLHRLILSRSSYFSGYAVMDFESATSIAYIMTCRNMLHGPWKEASAPVLTLHVDDKNVNGEAIAMALAYMYGHHPKLNDNNAFRVLAAASFLDLQDLCAICTDFIIAELWTSNFLVYQVFAESQDYGIHGERVRNACWGYLCQSGAMELKEVLPKLSSQTLYALLTSDELWVPSEERRFELALFTFLAKGAHCKEEPSEPGCSSSEIENSKTRENRSMDSTNVGLESELGHLSLKDGLEVHKGAHNLLVQLPDCVVDFQTGACSSKQKMQQATYSQSNLEAPFLCNAEGSSSLNNSFSEMNGILSSCSYINLPVTVGVSGLGASGIAMEGPSEEGCYQLDNNTWLTRDQTSHCASVNSSTNGLPSNDWGRCGMPAVSWGGRVVGRRQLKSYAKGNLSATGEDYDVFDSLFEGGSLLYCNMTFEALLNMRKQLEEFGFPCKAVNDGLWLQMLLRQRVQEIVADTCKSCCLTSIACACRQPFAFARGVSASGYYINEHDQNSSPGSVGNIYVAESSQGEGNGPFKPVRVHVRGPIEGLAGIGRGATFVPASAWPPTRFVFSRVPIGMGNRNCHQSLANDDSEARAEHSGDLSGDGLTALVGLSQGGSGGMNAQGEPTERGYEMELQSRISGTSMAGPSATGIPVQMLQAPDHALGIEWENENSTIALDMKTPLSHFPPFRFGVQFEDVHRLSDGQVKHSPEFFYAGSLWKVSAQAFNDEDPQGRRTLGLFLHRRKAEISDSLRKVHMFVDSREKVTARYQLICPSKREVMVFGNFKQAGTLLPKAPKGWGWRTALLFNELADFLQHGALRVAAVVQLV 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1243240 1249588 - Cp4.1LG08g04920.1 Cpe08g00182 473148

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00182 888 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 10 888 - -
Cpe08g00182 888 Gene3D Potassium Channel Kv1.1; Chain A 28 215 IPR011333 -
Cpe08g00182 888 ProSitePatterns Serine proteases, subtilase family, serine active site. 701 711 IPR023828 -
Cpe08g00182 888 SMART BTB_4 61 181 IPR000210 GO:0005515
Cpe08g00182 888 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 10 888 - -
Cpe08g00182 888 MobiDBLite consensus disorder prediction 1 32 - -
Cpe08g00182 888 ProSiteProfiles BTB domain profile. 61 151 IPR000210 GO:0005515
Cpe08g00182 888 Pfam BTB/POZ domain 55 179 IPR000210 GO:0005515
Cpe08g00182 888 SUPERFAMILY POZ domain 55 178 IPR011333 -
Cpe08g00182 888 MobiDBLite consensus disorder prediction 266 293 - -
Cpe08g00182 888 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00182 - - - mcha:111009280 1629.38
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g301 . . . . . . . . . . . . . . Sed12g0842 Cpe08g00182 . Bhi01g01020 Tan10g1013 Cmetu06g1851 . Hepe05g1444 . . . . . . . . . . . . Cone4ag0148 . . . . . . . . . . . Bma06g01499 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010984 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49825 PF00651 BTB 5.60E-09 CL0033 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00182 Cpe_Chr08 FPKM 51.144051 46.093513 62.418636 60.647503 29.629562 30.329481 29.691626 78.025452 81.679306 82.563828