Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00188 ATGCTTCAAGAAGCTTCAACAAAAGCCGAGGGAGAACTTGAAGTTAGCTTTGGTTATAAATGCAATGATAACATAGATGGAATTGAGGTTTCCGACAAATTCGAGATCCAGCCTGGACTTCGAAGGATCAGCAGTTTCTCTTGCTTATCTGGGGCTGCTTTGAGTGCAAATGCAACCTTAGCTAACACAAATATATGCAATGGGTTGATAGGAGTAGAAATACTTCCGACCTGGGACTCCCCTAACTCCTTCCGTAAGGTGCCCTCATCACCTACTCTTTCAAGGTTGGATATATTGTCAACGTCTCTGCAGAGTAGTCTGTCAAACTTAAGTTGCAGTCCATCTACCCCAACATCTGAGTATGATTCATGCTTGTTAAAGTCCACGAGTGCTCCTTCCGGAAGTGATGGTTTTCTTAATGTTAAGGAATTGCAAGTGGCAGGTGGAGCTGCTGGTGAGGACAGGGTCCAAGCTGTTTGTTCCGAAGAAAATGGATGGCTGTTTTGTGCAATTTATGATGGTTTTAATGGAAGAGATGCAGCTGATTTTCTTGCTGGGACATTGTATGAAACCATCGTATTTTATTTTAGCCTACTAGATTGGGGTGCCAAGAGTGAAACCTCGGATATTTTGGACATGGATAATTCACATCTTGATGATAGTAGCATTACTCAGGGAAGTTTTTCTACTTTTAGAAACAATAGGAAAAGTGCTTCAGATATCAACAATATATCTGAGAAACGTTCACAAGCCAAAGCAGGAATGGCAAACTATCCTCTAAGGCATGGGGTGCTAGATAGCCTCCAGCGTGCTCTTAGTCAAACAGAGAATGATTTTCTGCACATGGTTGAACAGGAAATGGAGGATCGTCCTGATTTAGTTTCTGTTGGATCTTGTGTTTTAGTTGTTCTTCTTCATGGAAAGGATTTATATACATTAAATTTGGGTGATAGTAGAGCAGTACTGGCTACTCTTGATGAAGGTGCAATGAGAGGGAATAGGGGACTGAAAGCTGTCCAGCTCACTCAGAGTCACACTGTGGATAATGCACTTGAAAGAGCGAAGTTACAGTATGATCATCCTGATGATCCTACAATCATTGTTGGTGGGAAAGTCAAAGGAAAACTGAAGGTGACTCGTGCTTTTGGAGTTGGCTACTTGAAGACGGACATGAATTTTCAGGACGAAGTTGATGTGGTATCAATGCTAAAAATGAAAAAGTTTAATGATGCTTTGATGGGTATTCTTCGAGTTCGTAACCTAATAAGCCCTCCCTATATTTCTACTCAACCGGCATTGTCTGTCCATAGGATATCAAAATCAGATTGCTTTGTAATAGTTGGCAGTGATGGTTTATTTGACTTTTTTGGCAATGACGAGGCAGTGAACCTTGTCCATTCATATATCTTGAGCAACCCAACTGGTGATCCTGCAAAATATTTACTGGAGCAGCTCTTATTGAAAGCTGCTGATTGCGCAGGTTTTAGCAAGGAAGAATTAATTACCATTCCAGCCGGAAGAAGAAGGAAATATCACGATGATGTAACTGTTATTGTAATCATCCTTGGAACAAATCAGCGCACCACAAGGGCATCTACTAGCATGTAA 1608 41.17 MLQEASTKAEGELEVSFGYKCNDNIDGIEVSDKFEIQPGLRRISSFSCLSGAALSANATLANTNICNGLIGVEILPTWDSPNSFRKVPSSPTLSRLDILSTSLQSSLSNLSCSPSTPTSEYDSCLLKSTSAPSGSDGFLNVKELQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYETIVFYFSLLDWGAKSETSDILDMDNSHLDDSSITQGSFSTFRNNRKSASDINNISEKRSQAKAGMANYPLRHGVLDSLQRALSQTENDFLHMVEQEMEDRPDLVSVGSCVLVVLLHGKDLYTLNLGDSRAVLATLDEGAMRGNRGLKAVQLTQSHTVDNALERAKLQYDHPDDPTIIVGGKVKGKLKVTRAFGVGYLKTDMNFQDEVDVVSMLKMKKFNDALMGILRVRNLISPPYISTQPALSVHRISKSDCFVIVGSDGLFDFFGNDEAVNLVHSYILSNPTGDPAKYLLEQLLLKAADCAGFSKEELITIPAGRRRKYHDDVTVIVIILGTNQRTTRASTSM 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1268820 1273814 + Cp4.1LG08g05000.1 Cpe08g00188 473154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00188 535 Gene3D - 118 531 IPR036457 -
Cpe08g00188 535 SMART PP2C_4 132 520 IPR001932 -
Cpe08g00188 535 Pfam Protein phosphatase 2C 233 472 IPR001932 -
Cpe08g00188 535 PANTHER PROTEIN PHOSPHATASE 2C 3 534 IPR015655 GO:0004722|GO:0006470
Cpe08g00188 535 SUPERFAMILY PP2C-like 152 523 IPR036457 -
Cpe08g00188 535 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 3 534 - -
Cpe08g00188 535 ProSiteProfiles PPM-type phosphatase domain profile. 138 522 IPR001932 -
Cpe08g00188 535 CDD PP2Cc 151 522 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00920 Cpe-Chr5:6041286 Cpe08g00188 Cpe-Chr8:1268820 4.26E-72 dispersed
Cpe08g00188 Cpe-Chr8:1268820 Cpe19g00351 Cpe-Chr19:3077215 1.82E-14 dispersed
Cpe17g00072 Cpe-Chr17:417449 Cpe08g00188 Cpe-Chr8:1268820 6.42E-32 wgd
Cpe03g01365 Cpe-Chr3:11023353 Cpe08g00188 Cpe-Chr8:1268820 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00188 - - bhj:120073713 877.856