Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00199 AAGAGGAAATTTGCTGACTTGTTAGGGCCTCAATGGAGCAGAGATGAGGTTGAGCAGTTCTATGAAGCATATCGTAAATATGGAAAAGATTGGAAGAAGGTAGCTGCTGCAGTAAGGAACCGTTCTACCGAAATGGTCGAGGCTCTTTTCACCATGAATAGGGCCTATTTATCACTTCCAGAGGGCACTGCTTCAGTTGTTGGGTTAATTGCAATGATGACTGATCATTACAGCGTACTGAGAGACAGTGAAAGTGAGCAAGAAAGTAATGAGGATTCAGGAGCAACAAGAAAGCCTCAAAAGCGACTGCGTGGAAAGTCACGAAATAACAACTCAAAGGGATTGGATGCACATTTTGGAGATGCTTCACAATCACAGTCACTTCCAACAAACTATGGCTGCCTGTCATTGTTGAAGAAAAGGCGTTCTGGAATTAAACCTCATGCTGTTGGAAAACGGACTCCGCGCGTCCCTGTATCATATTCATACGATAAAGATAGTAGAGAGAGGATTTTTTCACCTTCCAGGCATACTAGTAAGCTAAAGGTTGATGATCCAAATGATGATGATGTTGCTCATGAGATAGCTTTAGTTTTAACAGAGGCTTCGCAACGCGATGGTTCTCCTCAACTTTCACAAACACCAAATCCGAAAATAGAAGGTCATGTACTTTCACCTATCCGAAATGACAGGATGCGAAGTGAATCAGACATGATGAGTACGAAGTTTCGATGTAGTGAAATGGATGAAGGTGGTTGTGAATTAAGCTTAGGAAGCACTGGAGCTGATAATGCAGACTATGATCAGGGGAAAAATACTCGTGAGATTCAAAGAAAGGGTAAAAGGTACTACGGAAAGAAGGCAGAAGTTGAAGAAAGTATGTATAACCACTTGGATGACATCAAGGAAGCTTGTAGTGGGACTGAAGAGGGGCAAAAGTCAGGCAGTTTGAGGGGAAAACTTGAAACTGAGGATTTTGATGTAAAATCTGTGAGAACCTCTTTTAAAGGCCCAAGGAAGAGAAGTAAGAAAGCTCTATTTGGAGATGAATGCTCGGCATTTGATGCACTGCAAACTTTAGCTGATTTGTCTTTGATGATGCCAGACACTACTGCTGACACTGATGAATGCTCGGCATTTGATGCACTGCAAACTTTAGCTGATTTGTCTTTGATGATGCCAGACACTACTGCTGACACTGAGCCTTCTGCAAAGGTTAAAGAAGAAAATCTTGATGTCATGGACAAGTCTAAAATGAAAGGGAATCATTCAGTTGTGGGAGCTGGAATCTCTGCTTCCAAGACATCTAAGACGGGAAAGGCTTCAGGCAACAATGTTGGTCCTATTCCTGAAGCAGAAGGAATTCAAGGATCCAATAATGGAAATCGTAAAAGGAAACAGAAGTCCTCTCCATTTAAAATTTCATCTAAAGATGAAGATAGCAATGATTCTCGTGTCAATGACACTCCAAAAACCAAGGAGGTGGTGGTGTCTGAATTGAAGCGCTTGAATGATGAGGTGTTGGAAAACCAAATAAATGGAGACAACTTGCTCAAGGATTCAGAGAACTTTAAGAAGCAATATGCTGCTGTGCTATTACAGTTGAATGAAGTTAATGAACAGGCATGCGTCTCCTCTGCTCTGTATAGCTTGAGGCAGCGCAATACGTATCAAGGGACTTCACCATTAATGTTCCTCAAGCCAGTGCATGATTTGGGTGACCCTTGCTCTCATGCTCAAGAACCCGGTTCCCATGTGGCTGAAATTGTGGGAAGTTCCAGAGCAAAGGCTCAAACAATGATCGATGAAGCAATGCAGGCAATTCTTGCTCTGAAAAAAAGAGAAAGTAATTTGGAGAACATTGAAGAAGCCATTGATTTTGTGAGTAATAAACTCTCAGTAGATGATTTGGCCTTGCCAACTGTGAAATCAACATCTGCAGACACTAGTAATGCCACTCAAGTATCTCAGAATCATTTCAATGCGGTATCTCAGAATCATTTCAATGCGGGTGCATCAAACCCATCAGCTGCTAATTATGTAGTTGGTTCCAAGTCCAATAGCCCATCCGACAAGCCTGAAGTGGAGATCCCTTCAGAACTTATTGCGCACTGTGTAGCCACTTTACTCATGATTCAGAAATGCACAGAACGACAGTTTCCGCCAGCTGATGTTGCTCAGGTACTGGATTCTGCTGTCAATAGTTTGCAGCCATGTTGTCCTCAGAACCTTCCACTATATGCAGAAATACAGAAATGCATGGGAATTATAAGGAGCCAGATACTTGCGCTTATACCTACATAG 2304 42.19 KRKFADLLGPQWSRDEVEQFYEAYRKYGKDWKKVAAAVRNRSTEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYSVLRDSESEQESNEDSGATRKPQKRLRGKSRNNNSKGLDAHFGDASQSQSLPTNYGCLSLLKKRRSGIKPHAVGKRTPRVPVSYSYDKDSRERIFSPSRHTSKLKVDDPNDDDVAHEIALVLTEASQRDGSPQLSQTPNPKIEGHVLSPIRNDRMRSESDMMSTKFRCSEMDEGGCELSLGSTGADNADYDQGKNTREIQRKGKRYYGKKAEVEESMYNHLDDIKEACSGTEEGQKSGSLRGKLETEDFDVKSVRTSFKGPRKRSKKALFGDECSAFDALQTLADLSLMMPDTTADTDECSAFDALQTLADLSLMMPDTTADTEPSAKVKEENLDVMDKSKMKGNHSVVGAGISASKTSKTGKASGNNVGPIPEAEGIQGSNNGNRKRKQKSSPFKISSKDEDSNDSRVNDTPKTKEVVVSELKRLNDEVLENQINGDNLLKDSENFKKQYAAVLLQLNEVNEQACVSSALYSLRQRNTYQGTSPLMFLKPVHDLGDPCSHAQEPGSHVAEIVGSSRAKAQTMIDEAMQAILALKKRESNLENIEEAIDFVSNKLSVDDLALPTVKSTSADTSNATQVSQNHFNAVSQNHFNAGASNPSAANYVVGSKSNSPSDKPEVEIPSELIAHCVATLLMIQKCTERQFPPADVAQVLDSAVNSLQPCCPQNLPLYAEIQKCMGIIRSQILALIPT 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1324815 1337416 - Cp4.1LG08g04800.1 Cpe08g00199 473165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00199 767 MobiDBLite consensus disorder prediction 395 493 - -
Cpe08g00199 767 MobiDBLite consensus disorder prediction 401 419 - -
Cpe08g00199 767 MobiDBLite consensus disorder prediction 428 443 - -
Cpe08g00199 767 PANTHER LIN-9 374 484 IPR010561 GO:0006351|GO:0017053
Cpe08g00199 767 PANTHER LIN-9 493 767 IPR010561 GO:0006351|GO:0017053
Cpe08g00199 767 SMART sant 8 56 IPR001005 -
Cpe08g00199 767 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 374 484 IPR028306 -
Cpe08g00199 767 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 493 767 IPR028306 -
Cpe08g00199 767 MobiDBLite consensus disorder prediction 471 493 - -
Cpe08g00199 767 PANTHER LIN-9 1 376 IPR010561 GO:0006351|GO:0017053
Cpe08g00199 767 MobiDBLite consensus disorder prediction 203 222 - -
Cpe08g00199 767 MobiDBLite consensus disorder prediction 81 126 - -
Cpe08g00199 767 Pfam Myb-like DNA-binding domain 11 46 IPR001005 -
Cpe08g00199 767 ProSiteProfiles SANT domain profile. 7 44 IPR017884 -
Cpe08g00199 767 MobiDBLite consensus disorder prediction 81 99 - -
Cpe08g00199 767 MobiDBLite consensus disorder prediction 203 219 - -
Cpe08g00199 767 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 46 IPR017930 -
Cpe08g00199 767 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 376 IPR028306 -
Cpe08g00199 767 CDD SANT 12 46 IPR001005 -
Cpe08g00199 767 Gene3D - 4 64 - -
Cpe08g00199 767 MobiDBLite consensus disorder prediction 110 126 - -
Cpe08g00199 767 SUPERFAMILY Homeodomain-like 8 54 IPR009057 -
Cpe08g00199 767 Coils Coil 594 631 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00199 - - - bhj:120080265 838.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01374 Cpe08g00199 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00902 Cpe-Chr7:8074914 Cpe08g00199 Cpe-Chr8:1324815 4.71E-18 transposed
Cpe03g01374 Cpe-Chr3:11067475 Cpe08g00199 Cpe-Chr8:1324815 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49826 PF00249 Myb_DNA-binding 3.40E-07 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00199 Cpe_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0