Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00200 ATGAAGCCGTACGGTCAGTCTATGGAAGGCTCTCAGTCCGATCCGTCGCCTGAATGGACTGCGTCGGGACCTGATACAGGTCATGGAGAGCCGGTTTGGCCGTTGGGATCGAGGGAACGGGAATCGTACCCTGAAAGGCCTGAAGAGGCTGATTGTATATACTATCTACGTACCGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCTCGTGAGCGTAGCGCGGTTTTGGGAGGTGGTTCGAGACCTGGTGGAAGAGACTATCCCGAACGAGTAGGGCAGCCTTTGTGCCAGTACTATATGAGGACAGGAATGTGCAAATTTGGTACTTCCTGTAAGTATCACCATCCTCAGCAGGAAATGGGTTCTCTCAGCCCTGTGTCTTTGAATTTCTATGGCTATCCACTTCGGCAGGGGGAAAAGGAGTGCTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCTGAACCGGCTGGTTTGCAGTTTCCAGTACCATCACCCGTTCAGGTTGCACCACTGCCAGCTCCAATGCCTCCTGCACCGTCTGTTTATCCGCCCGTGCAGTCTCCATCTGCACATTCGTCACAGCAGTATGGAGTAATACTAGCAAGGTCTCCAATGCTGTCAAGCCCTTATGTTCCTAGCCCTTATGGTCCTATGTTGGTCTCCCCAGGGGNTAATACTAGCAAGGTCTCCAATGCTGTCAAGCCCTTATGTTCCCAGCCCTTATGGTCCTATGTTGGTCTCCCCAGGGATTGTACAATTCCCAAGTTGGAATCCTTACCAAGTATGTGCAGTTCCGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCAACTTTATGGTATGGCACAAGTTTCGCCTTCTGCACCTGCCTATGCTGGATCTTACCAGCCAATGCCATCTGCTGGTGCGTCAAGTACTAGCCAGAAGGAGCACTCGTTTCCAGAAAGACCTGGGCAGCCAGAGTGTCAATTTTACATGAGAACAGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTAATTCGAGATCAAGTGTTGTTCTTAGCCAAATAGGTCTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATATGCAAGTTTGGCCCTGCATGCAAATTTGACCACTCGATGGAACGACTTAGCTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCTTACCCTGTGGGATCGGTAGTCGGTACTTTAGCCCCATCATTTTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGACCCAGAATGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGCTGGTTCAACTACATCGAGGACAGAAATGCATTCTCATTCAAATGTTCAACGATCTTCTCAAAGTTCAGGCCTGTCAGCGAGCAGTACCTCCAGCACCACCAGTGTGGAGGGACGTACTTGA 1542 49.42 MKPYGQSMEGSQSDPSPEWTASGPDTGHGEPVWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERSAVLGGGSRPGGRDYPERVGQPLCQYYMRTGMCKFGTSCKYHHPQQEMGSLSPVSLNFYGYPLRQGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPVPSPVQVAPLPAPMPPAPSVYPPVQSPSAHSSQQYGVILARSPMLSSPYVPSPYGPMLVSPGXNTSKVSNAVKPLCSQPLWSYVGLPRDCTIPKLESLPSMCSSAPMSPVASPSAQPSVGSGQLYGMAQVSPSAPAYAGSYQPMPSAGASSTSQKEHSFPERPGQPECQFYMRTGDCKFGSSCRYHHPPELVNSRSSVVLSQIGLPLRPGAPPCTHFMQRGICKFGPACKFDHSMERLSYSPSASSLADMPVAPYPVGSVVGTLAPSFSSSELRPEHFSGPRMDSNPSRMSSSMSTSSGLAGSTTSRTEMHSHSNVQRSSQSSGLSASSTSSTTSVEGRT 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1347667 1352616 + Cp4.1LG08g04850.1 Cpe08g00200 473166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00200 513 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Cpe08g00200 513 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Cpe08g00200 513 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Cpe08g00200 513 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 337 362 IPR000571 GO:0046872
Cpe08g00200 513 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Cpe08g00200 513 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Cpe08g00200 513 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 384 408 IPR000571 GO:0046872
Cpe08g00200 513 Gene3D - 333 420 - -
Cpe08g00200 513 Gene3D - 42 122 - -
Cpe08g00200 513 MobiDBLite consensus disorder prediction 1 20 - -
Cpe08g00200 513 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Cpe08g00200 513 MobiDBLite consensus disorder prediction 279 298 - -
Cpe08g00200 513 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Cpe08g00200 513 SUPERFAMILY CCCH zinc finger 339 363 IPR036855 GO:0046872
Cpe08g00200 513 SUPERFAMILY CCCH zinc finger 96 123 IPR036855 GO:0046872
Cpe08g00200 513 ProSiteProfiles Zinc finger C3H1-type profile. 335 363 IPR000571 GO:0046872
Cpe08g00200 513 SUPERFAMILY CCCH zinc finger 385 412 IPR036855 GO:0046872
Cpe08g00200 513 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 14 495 - -
Cpe08g00200 513 MobiDBLite consensus disorder prediction 1 41 - -
Cpe08g00200 513 PANTHER PROTEIN PHOSPHATASE RELATED 14 495 - -
Cpe08g00200 513 ProSiteProfiles Zinc finger C3H1-type profile. 381 409 IPR000571 GO:0046872
Cpe08g00200 513 MobiDBLite consensus disorder prediction 317 332 - -
Cpe08g00200 513 MobiDBLite consensus disorder prediction 457 513 - -
Cpe08g00200 513 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Cpe08g00200 513 Gene3D - 123 172 - -
Cpe08g00200 513 SMART c3hfinal6 335 362 IPR000571 GO:0046872
Cpe08g00200 513 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Cpe08g00200 513 SMART c3hfinal6 381 408 IPR000571 GO:0046872
Cpe08g00200 513 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Cpe08g00200 513 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Cpe08g00200 513 MobiDBLite consensus disorder prediction 312 338 - -
Cpe08g00200 513 MobiDBLite consensus disorder prediction 443 513 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01375 Cpe08g00200 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00200 Cpe-Chr8:1347667 Cpe16g00747 Cpe-Chr16:7509290 7.95E-16 dispersed
Cpe03g01375 Cpe-Chr3:11100001 Cpe08g00200 Cpe-Chr8:1347667 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49827 PF00642 zf-CCCH 5.20E-09 CL0537 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00200 - - mcha:111009281 765.377