Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00202 ATGGCCGCCATTTCAATTTGCTTTGCTCCGCAAGCTCTTGCACGGCCCAGAATTCGAAACCCTAGAAGAATACAGTCGCCAAAGAAGCTTCGAGGGAACGACAAGCTTGATCGTAATAGCGTTAAGATAAGAACCAATTCGAAGGAGTTATCTTCCATTGGCGTTGAAGCCACTACCTATACTCGCCTCCCTCCCAGGGAAGACTTCGCTCTTCTTAGCTTTGATTCCCCGTCTTTTGATTCTACTTCTTCTTCTTCTTCTTCGAAGGTTTCGTCCGAGGTGAAGCTTTTGGATTCGGATGTTGCGATAATTGAGGAGGAAAATGATTTGGATTCTTTGAACCACGAAGAGAGGGAGGAAAAAGAGGAAGGAGGATTGGATGGGAATTTGGCTTTTGGGAATGGCTATGGGAAGTTTGAAGTGTTTGAGGGGGAATATGACTCTGAAATGGAGGAGTATGGCGATGATAGTGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGTTAGATGAGGAAGGAGAGAAGGTTTTGGCATTTAGGAAGGGAAGATTTGTTGATACTGATGAAGTGGAAACCTATTATGATGGTGCTTATGAAGCTGGCGAAGAAGATGTGAAGGAGAAGGGGCTGCCAGCAGTAATGCGGTGCTTTGATCGAGCGAAAATCTATGTGAAAGCTGGAGATGGTGGCAATGGCGTTGTGGCATTTCGGCGCGAGAAGTATGTGCCGTTGGGTGGCCCTTCAGGAGGAGATGGAGGGAGAGGTGGGAATGTGTATGTTGAAGTTGATGCGTCGATGAATTCGCTATTGCCATTTCGAAATGGTATACATTTTCGTGCAGGAAGGGGTAGTCATGGGCAGGGGAGAATGCAAAACGGGGCGAAGGGTGAGGATGTGGTGGTGAAAGTGGCCCCTGGAACAGTGATAAGAGACGCATTTAGCCAAGAGATTCTGTTGGAATTGTTACATCCGGGGCAGCGGGCTCTGTTGCTGCGCGGTGGAAGAGGTGGAAGAGGCAATGCATCATTCAAATCCGGGTCAAATAAGGTTCCGAAGATTTCAGAAAATGGAGAAGAGGGTTCAGAAATGTGGTTGGAGTTGGAGCTAAAGCTTGTTGCAGACGTTGGAATCGTCGGGGCACCAAATGCAGGGAAAAGCACACTTTTGAGCGTGATAAGTGCTGCACAGCCAGCCATAGCAAATTACCCTTTTACTACCCTACTCCCAAACTTGGGTGTTGTATCTTTTGACTATGACTCAACTATGGTGGTAGCAGATCTTCCAGGATTACTTGAAGGGGCACACGAGGGGTTTGGCTTAGGCCATGAATTTCTACGTCACACTGAAAGGTGTTCTGCACTGGTGCATGTGGTCGATGGGTCAGGACCACAACCTGAATATGAATTTGATGCTGTTCGTTTGGAGTTAGAGCTCTTTAGCCCCGAACTAGCTGAAAAGCCCTATCTTGTTGCCTATAATAAAATGGATCTTCCTGAAGCTTACGAAAACTGGCCAGCATTCAAGGAAAAGCTTCAAGCTCGTGGGATTGAAACTTTTTGTATGAGTGCCGTACAAAGAGAGGGCACTCATGAAGTCATCAGTGCTGCATATCAGCTACTAAGGGAAACTAAAGAAGCCAGGGAATTTCAAGGTGGGAAAATACCAGAGAATCTGGACTATGTGGCAGATAGAATACACAAGCAACGTAGTGCTTCTATTGATGACTTTGAAATTGTTCGTGATAGCGGTTCCTGGCATGTAGTTGGATCTGGTTTACAACGATTTGTTCAGATGACAAATTGGCGTTACATGGAGTCCGAAAGAAGGTTCCAACATGTCATGGAGGCATGTGGTGTCAACAAGTCTCTCAGAAAACTTGGCATCAAGGAGGGTGACACAGTATTTGTTGCAGAGATGGAGATGATCTGGCATGATTCACCCAATAGCTCTGGTACATCTAATATGAAGAAAAGATCAGATTCTGTGAAATGGCCAGAGTGGAAGTAA 2010 46.07 MAAISICFAPQALARPRIRNPRRIQSPKKLRGNDKLDRNSVKIRTNSKELSSIGVEATTYTRLPPREDFALLSFDSPSFDSTSSSSSSKVSSEVKLLDSDVAIIEEENDLDSLNHEEREEKEEGGLDGNLAFGNGYGKFEVFEGEYDSEMEEYGDDSEEEEEEEEEEEELDEEGEKVLAFRKGRFVDTDEVETYYDGAYEAGEEDVKEKGLPAVMRCFDRAKIYVKAGDGGNGVVAFRREKYVPLGGPSGGDGGRGGNVYVEVDASMNSLLPFRNGIHFRAGRGSHGQGRMQNGAKGEDVVVKVAPGTVIRDAFSQEILLELLHPGQRALLLRGGRGGRGNASFKSGSNKVPKISENGEEGSEMWLELELKLVADVGIVGAPNAGKSTLLSVISAAQPAIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHEGFGLGHEFLRHTERCSALVHVVDGSGPQPEYEFDAVRLELELFSPELAEKPYLVAYNKMDLPEAYENWPAFKEKLQARGIETFCMSAVQREGTHEVISAAYQLLRETKEAREFQGGKIPENLDYVADRIHKQRSASIDDFEIVRDSGSWHVVGSGLQRFVQMTNWRYMESERRFQHVMEACGVNKSLRKLGIKEGDTVFVAEMEMIWHDSPNSSGTSNMKKRSDSVKWPEWK 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1367247 1374125 - Cp4.1LG08g04760.1 Cpe08g00202 473168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00202 669 CDD Obg 374 541 IPR031167 GO:0005525
Cpe08g00202 669 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 374 542 IPR031167 GO:0005525
Cpe08g00202 669 Pfam Domain of unknown function (DUF1967) 577 644 IPR015349 GO:0000166
Cpe08g00202 669 PRINTS GTP1/OBG GTP-binding protein family signature 376 396 IPR006073 GO:0005525
Cpe08g00202 669 PRINTS GTP1/OBG GTP-binding protein family signature 397 415 IPR006073 GO:0005525
Cpe08g00202 669 PRINTS GTP1/OBG GTP-binding protein family signature 425 440 IPR006073 GO:0005525
Cpe08g00202 669 PRINTS GTP1/OBG GTP-binding protein family signature 442 460 IPR006073 GO:0005525
Cpe08g00202 669 TIGRFAM Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 577 644 IPR015349 GO:0000166
Cpe08g00202 669 ProSitePatterns GTP1/OBG family signature. 427 440 IPR006074 GO:0005525
Cpe08g00202 669 ProSiteProfiles Obg C-terminal (OCT) domain profile. 569 646 IPR015349 GO:0000166
Cpe08g00202 669 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 158 619 IPR045086 GO:0003924|GO:0005525
Cpe08g00202 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 544 IPR027417 -
Cpe08g00202 669 Coils Coil 103 123 - -
Cpe08g00202 669 Hamap GTPase Obg [obg]. 216 542 IPR014100 GO:0000287|GO:0003924|GO:0005525
Cpe08g00202 669 MobiDBLite consensus disorder prediction 72 91 - -
Cpe08g00202 669 MobiDBLite consensus disorder prediction 647 669 - -
Cpe08g00202 669 MobiDBLite consensus disorder prediction 107 129 - -
Cpe08g00202 669 Coils Coil 150 176 - -
Cpe08g00202 669 MobiDBLite consensus disorder prediction 147 174 - -
Cpe08g00202 669 Gene3D - 577 647 IPR036346 -
Cpe08g00202 669 SUPERFAMILY Obg GTP-binding protein C-terminal domain 576 646 IPR036346 -
Cpe08g00202 669 Gene3D GTP1/OBG domain 213 372 IPR036726 -
Cpe08g00202 669 MobiDBLite consensus disorder prediction 75 91 - -
Cpe08g00202 669 Gene3D - 373 552 IPR027417 -
Cpe08g00202 669 TIGRFAM Obg_CgtA: Obg family GTPase CgtA 218 541 IPR014100 GO:0000287|GO:0003924|GO:0005525
Cpe08g00202 669 MobiDBLite consensus disorder prediction 147 173 - -
Cpe08g00202 669 MobiDBLite consensus disorder prediction 18 39 - -
Cpe08g00202 669 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 2 158 619 - -
Cpe08g00202 669 Pfam 50S ribosome-binding GTPase 375 495 IPR006073 GO:0005525
Cpe08g00202 669 ProSiteProfiles Obg domain profile. 215 373 IPR006169 -
Cpe08g00202 669 SUPERFAMILY Obg GTP-binding protein N-terminal domain 218 372 IPR036726 -
Cpe08g00202 669 Pfam GTP1/OBG 219 372 IPR006169 -
Cpe08g00202 669 MobiDBLite consensus disorder prediction 108 126 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00202 - - - cmax:111472313 1205.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01234 Cpe-Chr2:11107762 Cpe08g00202 Cpe-Chr8:1367247 2.64E-08 dispersed
Cpe02g01740 Cpe-Chr2:14232032 Cpe08g00202 Cpe-Chr8:1367247 7.58E-13 dispersed
Cpe06g00580 Cpe-Chr6:3537072 Cpe08g00202 Cpe-Chr8:1367247 1.53E-11 dispersed
Cpe08g00202 Cpe-Chr8:1367247 Cpe20g00566 Cpe-Chr20:3360944 1.23E-12 dispersed
Cpe08g00202 Cpe-Chr8:1367247 Cpe06g00087 Cpe-Chr6:428271 1.53E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g339 . . . . . Bpe14g01139 . . . . Cma06g01481 . Car06g01274 . Sed02g1212 Cpe08g00202 . Bhi01g00970 Tan10g0975 Cmetu10g1427 . Hepe05g1468 . Lcy11g1435 . . . . . . . . . Cone7ag0164 Cone4ag0160 Lsi05g01519 . . Cme06g00707 Blo02g00518 . . Bda13g00170 . . . . . Cmo06g01477 . . . . . . . . . . . . . . Cla05g00630 Cam05g0690 Cec05g0699 Cco05g0696 Clacu05g0684 Cmu05g0652 Cre05g0723 . Csa03g01431 Chy06g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009907 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00202 Cpe_Chr08 FPKM 8.144291 9.874569 17.099171 15.213775 20.366087 20.589676 20.572586 15.947094 15.491552 16.995073