Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00215 ATGGGCTGCGTTTTTGGCCGAGAGGTTTCTGCGAAGCCCGTTCAGAGACCGAACGCCGATGACGAAATTAGGGCTTCTGCCAAGGCGGAGGTTCCTGAGATTCGAGCTGATGCTGCCGCTAATGTTCGCAATGGCGGAAGTAGGAACGAGGTTGATGATGATAGAGGTTCGAGGCCGAGGCGGCGATCGTCGAGGCCGAATCCGAGATTGAGTAATCCGCCGAAGCATGGCGAGCAAGTCGCCGCTGGTTGGCCGTCTTGGCTCTCCGCCGTCGCCGGTGAAGCTATCAATGGATGGATTCCTCGCCGTGCTGACAGTTTCGAGAAGCTTGATAAAATTGGGCAAGGGACGTATAGTAATGTGTACAAAGCCAGAGACTCATTGACAGGGAAGATTGTGGCTCTGAAGAAGGTTCGTTTCGACAATTTGGAGCCCGAGAGCGTCAAGTTTATGGCCCGGGAAATTCTCATTCTGCGGCGTTTGGATCATCCAAATGTTGTTAAACTCGAAGGTTTGGTGACGTCCCGAATGTCGTGTAGTTTATATCTTGTATTTGAATACATGGAACACGATCTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTTACGGAATCGCAGGTTAAATGTTACATGAACCAATTGTTATCAGGGCTTGAACATTGTCACAACCGTCACGTGCTGCATCGTGATATAAAGGGATCGAATCTTCTGATCGATAACGATGGGATCCTTAGGATAGCTGATTTCGGATTGGCGTCTGTCTTTGATCCTAACCACAAGCATCCAATGACAAGTAGGGTGGTTACGCTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCTACTGATTATGGCGTTGGTGTAGACCTCTGGAGTGCTGGCTGCATTTTAGCCGAGCTGTTAGCTGGAAAGCCTATCATGCCCGGTCGCACCGAGGTAAAGCTCGTTAGCAATCCATCTTTCGTTCCGTCTTCAGTTCATCGAATGCCGTTTGATCTTCTTGTTGAGCAGCTGCATAAGATATTCAAGTTATGTGGCTCTCCTACAGAAGAATACTGGAAAAAGTCGAGATTGCCTCATGCAACCATATTCAAGCCTCAACATTCATACAAGAGATGCATAGCAGAGACGTTTAAAGACTTCCCGCCGTCATCTCTGCCACTAATCGAGACGCTTCTCGCCATCGACCCCGCTGAACGCCTAACTGCCACGGCTGCTTTACATAGTGAATTTTTCACTACAAAGCCATATGCTTGTGAGCCTTCCAGTCTTCCTAAGTATCCTCCAAGCAAGGAAATGGATGCAAAACTACGGGACGAAGAAGCTAGAAGGCTAAGAGCTGTTGGCAGAAGCAATGCAGATGGAGTGAAGAGAACACGGGCACGTGATCGAGCTGTTCGGGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTTCAAGCCAATCTCGATAGACGACGTCTCATAACACACGCAAATGCGAAGAGCAAGAGTGAAAAGTTTCCTCCTCCACATCAAGACGGAGCGATTGGCTACCAACTGGGATCTTCGCATCACGTCGATCCGATCTATGATCCTCCCGACGTTCCATTTAGCACCATGAATTTCTCGTATCCAAAAGCAAGCATCCAAACATGGTCTGGTCCCTTGATGGACCCAGGTGCCGTTGGTGCTCCTCCAAGAAGGAGAAAACACACCGCAGGTCATTCATCAAGATCATCATCCAAGGACTTGAATAAGGATAAAAATTCTGCTCGTATCTAA 1764 48.92 MGCVFGREVSAKPVQRPNADDEIRASAKAEVPEIRADAAANVRNGGSRNEVDDDRGSRPRRRSSRPNPRLSNPPKHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDSLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTESQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIDNDGILRIADFGLASVFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVKLVSNPSFVPSSVHRMPFDLLVEQLHKIFKLCGSPTEEYWKKSRLPHATIFKPQHSYKRCIAETFKDFPPSSLPLIETLLAIDPAERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAVGRSNADGVKRTRARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGAIGYQLGSSHHVDPIYDPPDVPFSTMNFSYPKASIQTWSGPLMDPGAVGAPPRRRKHTAGHSSRSSSKDLNKDKNSARI 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1430904 1434475 + Cp4.1LG08g04640.1 Cpe08g00215 473181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00215 587 Pfam Protein kinase domain 107 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00215 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Cpe08g00215 587 MobiDBLite consensus disorder prediction 570 587 - -
Cpe08g00215 587 PANTHER OS01G0367700 PROTEIN 54 315 - -
Cpe08g00215 587 Gene3D Transferase(Phosphotransferase) domain 1 190 452 - -
Cpe08g00215 587 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Cpe08g00215 587 PANTHER CELL DIVISION PROTEIN KINASE 331 567 - -
Cpe08g00215 587 PANTHER OS01G0367700 PROTEIN 331 567 - -
Cpe08g00215 587 MobiDBLite consensus disorder prediction 14 31 - -
Cpe08g00215 587 SMART serkin_6 107 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00215 587 MobiDBLite consensus disorder prediction 544 587 - -
Cpe08g00215 587 Gene3D Phosphorylase Kinase; domain 1 94 189 - -
Cpe08g00215 587 MobiDBLite consensus disorder prediction 47 61 - -
Cpe08g00215 587 SUPERFAMILY Protein kinase-like (PK-like) 100 418 IPR011009 -
Cpe08g00215 587 CDD STKc_CDK9_like 107 413 - -
Cpe08g00215 587 ProSiteProfiles Protein kinase domain profile. 107 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00215 587 MobiDBLite consensus disorder prediction 1 79 - -
Cpe08g00215 587 MobiDBLite consensus disorder prediction 493 514 - -
Cpe08g00215 587 PANTHER CELL DIVISION PROTEIN KINASE 54 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00215 K08819 CDK12_13; cyclin-dependent kinase 12/13 [EC:2.7.11.22 2.7.11.23] - csv:101217952 981.089
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01388 Cpe08g00215 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00932 Cpe-Chr7:8358737 Cpe08g00215 Cpe-Chr8:1430904 0 dispersed
Cpe08g00215 Cpe-Chr8:1430904 Cpe20g00292 Cpe-Chr20:1630422 0 dispersed
Cpe20g00291 Cpe-Chr20:1628395 Cpe08g00215 Cpe-Chr8:1430904 4.08E-73 dispersed
Cpe11g00928 Cpe-Chr11:7792142 Cpe08g00215 Cpe-Chr8:1430904 0 transposed
Cpe03g01388 Cpe-Chr3:11172333 Cpe08g00215 Cpe-Chr8:1430904 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g361 . . . . . Bpe14g01150 . . . . Cma06g01464 Cma14g01644 Car06g01263 Car14g01474 . Cpe08g00215 Cpe03g01388 Bhi01g00949 . . . . . . . . . . . . . . . Cone7ag0178 Cone4ag0174 Lsi05g01501 . . Cme06g00688 Blo02g00578 Blo07g00189 . . . Bpe13g00648 . . . Cmo06g01464 Cmo14g01688 . . . . . . . . . . . . . Cla05g00613 Cam05g0674 Cec05g0684 Cco05g0679 Clacu05g0668 Cmu05g0636 Cre05g0708 . Csa03g01412 Chy06g00655 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000603 3 3 4 2 3 3 5 2 2 3 3 3 5 3 3 5 2 4 5 2 3 3 3 3 3 3 3 3 1 2 92
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62539 PF00069 Pkinase 2.50E-66 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00215 Cpe_Chr08 FPKM 3.175084 4.823771 3.44359 3.914232 5.847498 4.15888 4.150741 2.328833 1.404991 1.310526