Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe08g00216 | ATGTCTTTGAAGAGCATAATTCAGGAAATGAGATCCAGGTCCCGCCGTGTGGTGCAGGATGGATCGACGGCCGAAGTCGGTGATGGTTTGGCGCAGAGCTGTTGGGTTCACATGCCTCAGGAGTTGCTGAGAGAGGTTTTGATTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCCGCGGAAGAGCGTCGTGGCTTGCGCTGGAGTTTGCCGGAGCTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCCGAGGTTTCTGGCACATTGACGTTTCCTATCTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGTTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTATCTTAGTTTGACGAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGGAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCACTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTATTGGAAAATTAAGATCTAACTTTTTAGGAACCAAGTTCACAATCGTTGATGGACAGCCACCTCATGCGGGAGCCAAGATCTCAAGAAGTCGCTCCTCTAGGCTTGTAGGCCTGAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGGTACATATGA | 702 | 48.43 | MSLKSIIQEMRSRSRRVVQDGSTAEVGDGLAQSCWVHMPQELLREVLIRIESSENAWPPRKSVVACAGVCRSWRRITKEIVKTPEVSGTLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFIGKLRSNFLGTKFTIVDGQPPHAGAKISRSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRYI | 233 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1432750 | 1439069 | - | Cp4.1LG08g04560.1 | Cpe08g00216 | 473182 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe08g00216 | 233 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 9 | 1 | 231 | - | - | |
Cpe08g00216 | 233 | Pfam | F-box domain | 37 | 82 | IPR001810 | GO:0005515 | |
Cpe08g00216 | 233 | Gene3D | Tubby Protein; Chain A | 95 | 233 | IPR025659 | - | |
Cpe08g00216 | 233 | PRINTS | Tubby superfamily signature | 215 | 233 | IPR000007 | - | |
Cpe08g00216 | 233 | PRINTS | Tubby superfamily signature | 150 | 166 | IPR000007 | - | |
Cpe08g00216 | 233 | PRINTS | Tubby superfamily signature | 166 | 190 | IPR000007 | - | |
Cpe08g00216 | 233 | Gene3D | - | 29 | 82 | - | - | |
Cpe08g00216 | 233 | SUPERFAMILY | Tubby C-terminal domain-like | 84 | 231 | IPR025659 | - | |
Cpe08g00216 | 233 | PANTHER | TUBBY-RELATED | 1 | 231 | - | - | |
Cpe08g00216 | 233 | SUPERFAMILY | F-box domain | 29 | 78 | IPR036047 | GO:0005515 | |
Cpe08g00216 | 233 | Pfam | Tub family | 96 | 231 | IPR000007 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g00216 | Cpe-Chr8:1432750 | Cpe02g00859 | Cpe-Chr2:5722716 | 1.43E-84 | dispersed | |
Cpe12g00258 | Cpe-Chr12:1722248 | Cpe08g00216 | Cpe-Chr8:1432750 | 4.03E-107 | wgd | |
Cpe17g00002 | Cpe-Chr17:23583 | Cpe08g00216 | Cpe-Chr8:1432750 | 1.67E-141 | wgd | |
Cpe03g01389 | Cpe-Chr3:11176850 | Cpe08g00216 | Cpe-Chr8:1432750 | 1.10E-160 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49828 | PF01167 | Tub | 1.10E-44 | CL0395 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe08g00216 | K19600 | - | csv:101217713 | 443.736 |