Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00216 ATGTCTTTGAAGAGCATAATTCAGGAAATGAGATCCAGGTCCCGCCGTGTGGTGCAGGATGGATCGACGGCCGAAGTCGGTGATGGTTTGGCGCAGAGCTGTTGGGTTCACATGCCTCAGGAGTTGCTGAGAGAGGTTTTGATTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCCGCGGAAGAGCGTCGTGGCTTGCGCTGGAGTTTGCCGGAGCTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCCGAGGTTTCTGGCACATTGACGTTTCCTATCTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGTTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTATCTTAGTTTGACGAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGGAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCACTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTATTGGAAAATTAAGATCTAACTTTTTAGGAACCAAGTTCACAATCGTTGATGGACAGCCACCTCATGCGGGAGCCAAGATCTCAAGAAGTCGCTCCTCTAGGCTTGTAGGCCTGAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGGTACATATGA 702 48.43 MSLKSIIQEMRSRSRRVVQDGSTAEVGDGLAQSCWVHMPQELLREVLIRIESSENAWPPRKSVVACAGVCRSWRRITKEIVKTPEVSGTLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFIGKLRSNFLGTKFTIVDGQPPHAGAKISRSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRYI 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1432750 1439069 - Cp4.1LG08g04560.1 Cpe08g00216 473182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00216 233 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 231 - -
Cpe08g00216 233 Pfam F-box domain 37 82 IPR001810 GO:0005515
Cpe08g00216 233 Gene3D Tubby Protein; Chain A 95 233 IPR025659 -
Cpe08g00216 233 PRINTS Tubby superfamily signature 215 233 IPR000007 -
Cpe08g00216 233 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cpe08g00216 233 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cpe08g00216 233 Gene3D - 29 82 - -
Cpe08g00216 233 SUPERFAMILY Tubby C-terminal domain-like 84 231 IPR025659 -
Cpe08g00216 233 PANTHER TUBBY-RELATED 1 231 - -
Cpe08g00216 233 SUPERFAMILY F-box domain 29 78 IPR036047 GO:0005515
Cpe08g00216 233 Pfam Tub family 96 231 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00216 Cpe-Chr8:1432750 Cpe02g00859 Cpe-Chr2:5722716 1.43E-84 dispersed
Cpe12g00258 Cpe-Chr12:1722248 Cpe08g00216 Cpe-Chr8:1432750 4.03E-107 wgd
Cpe17g00002 Cpe-Chr17:23583 Cpe08g00216 Cpe-Chr8:1432750 1.67E-141 wgd
Cpe03g01389 Cpe-Chr3:11176850 Cpe08g00216 Cpe-Chr8:1432750 1.10E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49828 PF01167 Tub 1.10E-44 CL0395 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00216 K19600 - csv:101217713 443.736