Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00220 ATGGCAGCTTCTAACCAGAGTTTTGTTTCATGTAGTTCATCATCAGCTGCCAGTTTCTTCGCGGATATCGTTTCAGGTGTTGTTGCTGTCTTGGACGAGATGGCGTCCGCACAAAATGTCGAGTTGGAGGCAGCAAAGTTTCTGCACAAACTAATTCAAGAATCTAGAGACGAGCCAGCAAAATTGGCTACAAAACTCTACGTGATATTGCAACACATGAAGTCGAGTGGGAAAGAACATTCCATGCCATATCAAGTAATATCAAGAGCCATGGAGACTGTCATCAATCAACATGGTCTTGATATTGAAGCTTTGAGGGCTTCACGCCTTCCTCTCACTGGTGGAACTCAGATGGGTGATTCTACCACTGCACAATATGCGGGCTCCTCCAGTGTTGTTGGTACAGCTAAAGATTCCAAAATGGGTATATCTGGAAGTGACACCAGAAGTGGCTCACTTGCTCCAAGCAAGCCACCTGTTGCCCCAAGTAGTACAGATCATGATTACTACCAAGGACCTGCAACTCATCGGAGTGGTCAATCTTTTGATCAAGGAAGTCCTTCTAGTTTGGATTCGAGGTCTGCCAACTCACAGTCACAAGAGAAGCACGATTCAGTGAGTTGGGACAAACAACTAAATGATAAGGATGGTAAGAAGGGCACCAAGAAGAGGAAGAAGGTGGATACATCAGTTATGGAACCATCTAGTGACGATACCCATCAACTTGATTCCCGCAATCCATCGGGTCGAACCACCGTNGACGATACCCATCAACTTGATTCCCGCAATCCATCGGTTAATCCTAGGAATGTGAAGACAAATAGGCTCGAACCACCGGCATATCTAGTTAAGGGAGGCAATATTGAGCAGGTGAAGCATGGATTAACAAAGGCTGCTGAAAAGGCTATTGACCCTCAAATGTATTCTGTGAACAGAGGTGATGGGATATCTACCTCGGGCGAAAAAGTTTTGGAGAGTGAACTACCTATATCTAGCACATCATCAGTTGATGCTGCGAAAATGATTCAGGGTGCATGGCGGAACAGCGGACCAGAAATGAGTATGTTACGTAACCCCGTTTCTAGAGAAGCAGGAAAGCTTCCTGTTTCTCAGGTTCCTACCTCATCCCAATCTCGTTTGCCTTTCAAGGAACAACAATTAAAGCAACTTAGGGCTCAGTGCCTTGTGTTTTTAGCATTCAGAAATGGTTTAATGCCAAAGAAACTGCATCTTGAAATTGCCCTCGGGAATAATTCTCCTAAAGAAGAGGGGCTTCACAAAGATGTTGATCCTAGAGGCATTGCTCAATCTTTTAATGAGGCCAGAAGTTCCAGTGAAGTCATGATGCCATCAGGAAAGTTGGATGCTGCAAGGGGAACAGGTACGATGATCCCAGGCGCCGTATCTGCCGGAAGAACCTATGAGGTTGACTCCATGAAGGAAGTAGATAATAGAAGAGAAGAGGATAACAAGGGTCCACTTTTTGATTATTCTGTTCAAGCAGAAGTAAGAAAGCCAGAAGCTGAACTAATGCGGGAAAAAGCAATTTCTCAAACATTCTTGAGCACTGCATCGCATCCCCTTGACTTTTCGAGTGCAAGGGGGAGCTTAACTGCAAATAACGCTCTTGAGGATTTGGGGAATAGCAATCTTCTGATTGGACAGACCAATCAAGCCACTGCTACAGTGGGTATGAGTAAGCCACTAAACCCTAGAATTGACAGCACAAATGAGGTTTCTAGGGGAAGTCTACCAGCCTTTGCTAGTCAGCATGAGCTGGTAGTTGATAGAAATAATGATGCATCTGCTCAGTTGCACGTTGTTAGAAACAACAGTGGTTTAGGGAGTCAATGTACTAATAGTCGGTCTTCTTTTTCAATAGGGGAGCGGTGGAAACCTATCTCTGGGACATATGATCAATACCATGCTGTAATGCCTTTGAGAGATGCTAGTGTGATCTCAAATCTTGCATCTCATGATTATAGAAATATGCCAGAATCTGAACCTAGATGCATTACAGAAGTGCACAAAGTGACATCTGTAGATGAAGGGATAAATGGCAGCCTAAATACTATGGAACAAGAAGATGATGGTAAGTCAGTGCCATCTGATTTGCTGATGTCTCGAAAGTACACCATGTCAGAGAAATGGATAATGGATCGGCAGAAAAAGAAACTCCTAAATGAACAAAATTGGTTACTGAAACAACAAAAAACTGAGAAACGTATTGCCACTCGTTTTGATAAGTTAAAGAGTACTGTCAGCTCATCAGATGATATATCTGCGAAAACTAGAAGTGTAATAGAATTGAAAAAACTTCAACTCTTGCAGCTTCAGCGTCGCCTCAGGAATGATTGTCTAAATGATTTCTTCAAACCAATTTCGAATGAGATGGACCGCTTGAAATCTTTCAAGAAGCACAAACATGGTAGGAGGATTAAACAACTTGAAAAATTCGAGCAGAGAATGAAGGAGGAGAGGCAAAAGAGAATACGAGAGAGGCAAAAGGAGTTCTTTGGTGAGATTGAAGTTCACAAGGAAAGACTTGATGATGTATTTAAAGTTAAGAGAGAGAGGTGGAAGGGTTTCAATAAGTATGTCAAGGAGTTCCACAAAAAGAAGGAACGAATTCATCGTGAGAAAATTGACAGAATCCAACGTGAGAAGATCAATCTTTTGAAGATCAATGATGTCGAGGGGTATCTGCGAATGGTGCAGGATGCAAAATCGGATCGTGTTAAGCAACTTCTCAAGGAGACTGAGAAATATCTTCAAAAGCTTGGATCTAAGCTACAGGAGGCGAAGTCCACAGAAAGCCGGTTTGGGCATGATACAGATGATGGATGCGACCATTACTTGGAAAGTAACGAGAAGTACTACTTGATGGCTCATAGTGTTAAAGAAAGCATAGCTGAGCAGCCAGCCTGCCTTCATGGAGGAAAGTTGAGGGAGTATCAGATGAATGGCCTTAGGTGGCTCGTTTCGTTATATAACAACCATTTGAATGGAATTCTTGCTGATGAAATGGGGCTTGGAAAAACTGTTCAGGTACCATACTATTTTAAGCTGTCTTGTATGCGACTAGATCTAGCTTCTGCACCGTTCCGTACTAAGAACGATCGAGGTCCTTTTTTGGTGGTTGTACCGTCATCAGTTTTACCTGGATGGGAGTCAGAGATCAACTTCTGGGCCCCAAGTGTGCTTAAAATTGTGTATTCTGGACCTCCAGAAGAGCGGCGCAGACTATTCAAGGAGAGAATTGTTCATCAGAAGTTTAATGTACTTCTGACCACATATGAGTATCTGATGAACAAACATGATAGGCCAAAATTAAGCAAAATTCATTGGCACTATATTATAATTGATGAAGGCCATCGCATAAAGAATGCTTCATGCAAGTTGAATGCTGATCTGAAGTACTACCGTAGTTCTCACAGATTACTCTTGACCGGGACACCGCTACAGCTTACTTCAGAAGAATTGCCAACTTTTCCTTCATCTGATCATGGAAGCGTTCAAGTCCTTGAAGCTTCTGCTGGAAGTCCCGATGGTAGAGGTTATGCTGTGGAGCCTGATTTGCTAACTCCTAGAGTTGAGGCTGCGGAATGCACTTTCAAAACTGATGTTGAAGGTCAGAAAACATCATTAAATGATAGTAGTAATCGTATTCCGGATGAGAATTTGAAGGTATCAGATCACGTGGAAGAAAACGCCGAATTTGTTAATCCTGAGAATGTTCCTGAGAAAAGCGTTCCGATTCCTCGGATTCAGGATAATGAAGGTAACCGAGCTGACAACCATGGTGCATGTCTCAGGGATATGGATATCTCCAGTTCTGATGCTGTTGTTGAAATGGACGATTCTGACGAAAAACGTGTATCAGAAGGTAAAACTGATGATATGGTTCTGCTACCAGCTTCATTGCAGGGAGGGGAAGAAAATTGTTCTTTCACATCTGTGGGAGATCAAGTTGATAATTTAGGGAACCAGGAGGAACCCAACAAATTTGGAGTTCAAGGGTCTCCTGGGGAGAAAAAGCAATCCGATCCTCTAGTCGAGGATGTTCTTGGAACTTCGGCACAATCTTTATCTTCTTCAGAAGTTAAGGATTCATATACGATGACGTTGCTCGATACAAATTTAGATAATTCAGGTGATCAAACTGATTTACCTGTATCCTCATCCACGGTGACAGACAGAGAAAAGATTGGGGATTCTTCCAAGGATGATTCGTGTGGCTGCACGGTCACAGATTCAGTAGAAGCTCTCGAGGATAGTGGACTATTAACAAACGAGATGTCGGATGTTTCGGTTGTGCCTGCTTCATCGTCTCAAATGGAACCCATTAGCTCCCCAGTCTCTCTGGAGGGGCCAAGTGATTATCAAGGTAGTGATCATATGGTGGCAACACAGGATAACCTGGTTTTATCAGAAAACGTATCATCTGAGGAAGACAAGCTGCGAAACTCGTTCGAGAAAACCTTATTAGATTGTGCAGACCCGTCGGAGGATCGTAAGGAGTCTGATATTAGCAGCAAGGGACAGCTTTTAAGCATCACTGAAAACCTCCGCTTCAATGATCCTTCCAATCATCTAACGGTATCAAAGAAGTTGGAAGCTTCAGCTGGTGATCAGACAGGGGATGTTCATCAAACAGGGGAGGCTGTATCAGTAAATGCAGTTGATACCTTTACTCAGCCCGCACCTCCAACAACCATGGAAGAAGAGAAGTCCGATGCCTTACTCGACAGTGGTCTAATTGCTAGCTCATCATCACGGCCACTGAACGACATACAAGGTTCTCAGTCCGATACAGATCCAATGGATTCTTCTCAAGCTGGTGCGATTTTAGAAAAGAATATATCAGGAGAAACAATTGTGTCTTCGTCTTCTCCGGTTTCAGAGGAGGTAGGAGCAGGTCTAATGCAATCTGTTGCTGAAGTTCAGACGATTGACCAAACAGATGCATCCGAGGTGGGGGAGCCTTCTCTAGAGAAGGCTGTCACAGAAGTAGCCAATCCTCCATCCTCTCTACCTGCTGAAACTGAAAGTATGGAAAGCTCACAAGTTCCAAGTCCGATCGATAGCGCCATTGCAGTTGTAGAAGCAGTCGTACGCGACGAAGCCGATGATGTACTCACAGCAAATGAAAGGTGCCAGTCAGCAGGTGGCTCATCAGTGCAGGATCCGGCTGACAGCATTGCAGGTGTAGAAATGGTCATATGTGATCAAGCTGATGTTCCTCCAACCTGTGACACGGCACAGGGTGCAGTTGATACAACAGCCATATGTGCTCAAATTGACGTACCTCCGGTTTGTGACACGGCACAGGATCCAGCAGATAGCACTACCATACGTGATAGAGTCTATGTACCTTCAGCTTGCAATTCAGCACAGGGTACAGCTGATACCGCTGTCGAGTGTAATCAAGTCGATGTACCTCCAGCTTGCAACTTGGTCCAGAGTCAAACTGATAGCGCCACTGCAGCTGCAGAAACTACCATAAGCGATCAAGTCGATGTGTCCTCCAGTTCGACTCTGCCAGAAAATGAATCTGCAAATTTGGACCTGCCTCCTAGCTGTTCAGAAGTAGAGGACGAAAGCATCGAGCACCAACTGGAGGAAACTCCAGTCAACAAGAGTTCAGTTGAATCAGAATCAGAGGATCCAAAGCAA 5676 43.96 MAASNQSFVSCSSSSAASFFADIVSGVVAVLDEMASAQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQHGLDIEALRASRLPLTGGTQMGDSTTAQYAGSSSVVGTAKDSKMGISGSDTRSGSLAPSKPPVAPSSTDHDYYQGPATHRSGQSFDQGSPSSLDSRSANSQSQEKHDSVSWDKQLNDKDGKKGTKKRKKVDTSVMEPSSDDTHQLDSRNPSGRTTVDDTHQLDSRNPSVNPRNVKTNRLEPPAYLVKGGNIEQVKHGLTKAAEKAIDPQMYSVNRGDGISTSGEKVLESELPISSTSSVDAAKMIQGAWRNSGPEMSMLRNPVSREAGKLPVSQVPTSSQSRLPFKEQQLKQLRAQCLVFLAFRNGLMPKKLHLEIALGNNSPKEEGLHKDVDPRGIAQSFNEARSSSEVMMPSGKLDAARGTGTMIPGAVSAGRTYEVDSMKEVDNRREEDNKGPLFDYSVQAEVRKPEAELMREKAISQTFLSTASHPLDFSSARGSLTANNALEDLGNSNLLIGQTNQATATVGMSKPLNPRIDSTNEVSRGSLPAFASQHELVVDRNNDASAQLHVVRNNSGLGSQCTNSRSSFSIGERWKPISGTYDQYHAVMPLRDASVISNLASHDYRNMPESEPRCITEVHKVTSVDEGINGSLNTMEQEDDGKSVPSDLLMSRKYTMSEKWIMDRQKKKLLNEQNWLLKQQKTEKRIATRFDKLKSTVSSSDDISAKTRSVIELKKLQLLQLQRRLRNDCLNDFFKPISNEMDRLKSFKKHKHGRRIKQLEKFEQRMKEERQKRIRERQKEFFGEIEVHKERLDDVFKVKRERWKGFNKYVKEFHKKKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLQEAKSTESRFGHDTDDGCDHYLESNEKYYLMAHSVKESIAEQPACLHGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVPYYFKLSCMRLDLASAPFRTKNDRGPFLVVVPSSVLPGWESEINFWAPSVLKIVYSGPPEERRRLFKERIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKYYRSSHRLLLTGTPLQLTSEELPTFPSSDHGSVQVLEASAGSPDGRGYAVEPDLLTPRVEAAECTFKTDVEGQKTSLNDSSNRIPDENLKVSDHVEENAEFVNPENVPEKSVPIPRIQDNEGNRADNHGACLRDMDISSSDAVVEMDDSDEKRVSEGKTDDMVLLPASLQGGEENCSFTSVGDQVDNLGNQEEPNKFGVQGSPGEKKQSDPLVEDVLGTSAQSLSSSEVKDSYTMTLLDTNLDNSGDQTDLPVSSSTVTDREKIGDSSKDDSCGCTVTDSVEALEDSGLLTNEMSDVSVVPASSSQMEPISSPVSLEGPSDYQGSDHMVATQDNLVLSENVSSEEDKLRNSFEKTLLDCADPSEDRKESDISSKGQLLSITENLRFNDPSNHLTVSKKLEASAGDQTGDVHQTGEAVSVNAVDTFTQPAPPTTMEEEKSDALLDSGLIASSSSRPLNDIQGSQSDTDPMDSSQAGAILEKNISGETIVSSSSPVSEEVGAGLMQSVAEVQTIDQTDASEVGEPSLEKAVTEVANPPSSLPAETESMESSQVPSPIDSAIAVVEAVVRDEADDVLTANERCQSAGGSSVQDPADSIAGVEMVICDQADVPPTCDTAQGAVDTTAICAQIDVPPVCDTAQDPADSTTIRDRVYVPSACNSAQGTADTAVECNQVDVPPACNLVQSQTDSATAAAETTISDQVDVSSSSTLPENESANLDLPPSCSEVEDESIEHQLEETPVNKSSVESESEDPKQ 1892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1463405 1481181 + Cp4.1LG08g04660.1 Cpe08g00220 473186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00220 1892 MobiDBLite consensus disorder prediction 1834 1892 - -
Cpe08g00220 1892 MobiDBLite consensus disorder prediction 1379 1412 - -
Cpe08g00220 1892 PANTHER CHROMATIN STRUCTURE-REMODELING COMPLEX PROTEIN SYD 133 247 - -
Cpe08g00220 1892 PANTHER CHROMATIN STRUCTURE-REMODELING COMPLEX PROTEIN SYD 356 1161 - -
Cpe08g00220 1892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 960 1161 IPR027417 -
Cpe08g00220 1892 MobiDBLite consensus disorder prediction 1242 1268 - -
Cpe08g00220 1892 MobiDBLite consensus disorder prediction 1675 1692 - -
Cpe08g00220 1892 MobiDBLite consensus disorder prediction 1438 1465 - -
Cpe08g00220 1892 MobiDBLite consensus disorder prediction 115 276 - -
Cpe08g00220 1892 MobiDBLite consensus disorder prediction 203 244 - -
Cpe08g00220 1892 MobiDBLite consensus disorder prediction 168 202 - -
Cpe08g00220 1892 PANTHER SNF2/RAD54 HELICASE FAMILY 133 247 - -
Cpe08g00220 1892 PANTHER SNF2/RAD54 HELICASE FAMILY 356 1161 - -
Cpe08g00220 1892 MobiDBLite consensus disorder prediction 1311 1336 - -
Cpe08g00220 1892 MobiDBLite consensus disorder prediction 1671 1692 - -
Cpe08g00220 1892 Gene3D - 950 1164 IPR038718 -
Cpe08g00220 1892 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 994 1171 IPR014001 -
Cpe08g00220 1892 Coils Coil 917 937 - -
Cpe08g00220 1892 MobiDBLite consensus disorder prediction 1311 1349 - -
Cpe08g00220 1892 MobiDBLite consensus disorder prediction 1379 1400 - -
Cpe08g00220 1892 MobiDBLite consensus disorder prediction 1589 1611 - -
Cpe08g00220 1892 Coils Coil 816 836 - -
Cpe08g00220 1892 SMART ultradead3 978 1175 IPR014001 -
Cpe08g00220 1892 SMART QLQ_2 380 415 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe08g00220 1892 Pfam SNF2-related domain 986 1161 IPR000330 GO:0005524|GO:0140658
Cpe08g00220 1892 ProSiteProfiles HSA domain profile. 821 895 IPR014012 -
Cpe08g00220 1892 MobiDBLite consensus disorder prediction 245 272 - -
Cpe08g00220 1892 MobiDBLite consensus disorder prediction 1834 1857 - -
Cpe08g00220 1892 MobiDBLite consensus disorder prediction 115 159 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00220 - - - cmos:111445069 2023.82
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01393 Cpe08g00220 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00220 Cpe-Chr8:1463405 Cpe08g00544 Cpe-Chr8:3554800 1.33E-68 dispersed
Cpe17g00093 Cpe-Chr17:551467 Cpe08g00220 Cpe-Chr8:1463405 1.19E-38 wgd
Cpe03g01393 Cpe-Chr3:11212318 Cpe08g00220 Cpe-Chr8:1463405 9.61E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g371 . . . . . Bpe14g01153 . . . . Cma06g01457 Cma14g01649 Car06g01259 Car14g01483 Sed02g1676 Cpe08g00220 Cpe03g01393 Bhi01g00925 Tan10g0941 Cmetu06g0809 . Hepe05g1489 . Lcy11g1461 . . . . . . . Cone14ag0789 Cone15ag0790 . . Lsi05g01493 . . Cme06g00682 Blo02g00553 . . . . . Bma02g00714 . . Cmo06g01459 Cmo14g01693 . . . . . . . . . . . . . Cla05g00609 Cam05g0669 Cec05g0679 Cco05g0673 Clacu05g0664 Cmu05g0632 Cre05g0702 . Csa03g01407 Chy06g00650 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006639 1 1 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 0 2 1 0 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49829 PF00176 SNF2_N 1.80E-37 CL0023 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00220 Cpe_Chr08 FPKM 7.865014 9.468605 3.944673 4.62591 31.950666 25.929283 31.554022 5.453937 3.650218 4.645048