Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00228 ATGGCATCAATGGTCGCTAAGCCGAGTTGTCCTGCTAATAGCAACCATGGGCCTTCTTCAGTGCTTGTCCAGGAAAAAGGAAGTAGGAATAAGAGGAAATACCGAGCAGATCCACCTTTAGGGGACCTGAATAAGATCACATCTTCATCTCAAGATGAATGTCCGAGTTATGATTTTTCAGCTGAGAAATTTGAGATTAGTTCAAGTCTGGGGCAAATCGGTGCGTGTGACCTGTGTAGCACTAGTCAAGAATTTTCTGCTGGATTGAAACTCGATCTCGGATTGTCCAATGGAGGCTCTCCTGATGTTGGGATAGACTGGCCAAGAGGGGAACTAGAAGTTGATGAGTTCCAAGATGTTGATTGGAGTGACCTTACAGAAGCTCAGCTGGTAGAACTAATTTTATGCAATTTAGACACAATATTCAAGGCTGCAATCAAGAAAGTTGTTGCTTCTGGATTCACTGAAGAGGTTGCTATAAAAGCCGTCTCGAGGTCTGGCATTTGTTTTGGTTGTAAAGATATCATGTCGAATGTAGTGGACAATACCTTAGCTTTCCTTAGAAGTGGCCAAGAAATTGATCAATCTAGGGAACACTATTTTGAGGATTTACAGCAACTAGAAAAATATATTTTAGCTGAATTAGTTTGTGTTCTACGAGAGGTTAGGCCTTACTTCAGCACTGGCGATGCAATGTGGTGCTTATTGGTCAGTGACATGAGTGTATCTCATGCATGTACAATGGATAGTGACCCGTCTAACGCAGTTGTCTGCGATGGGACTTCGAATGAGGGTTCAACTAACTCTACCCCACAGTTAAAAGCAGAAGCCAAAAGCTCTGAGTTGAATTTTCCTAAGCCTCTTAAGCCAATTTCTCCAATCAGCTGTGCTCATAGTTCTCAATCCGATGGACCAGCCACTCTAGGAGTTCCTAATCTTACTAAACCAAAGGACCCATTATTCACAAGTGTATCAGTATCAGATAAAGAACTGCAAAATTCTACCTCTGATGTTGCTAGGGAATCATTTAATGTGGGTGGAAACCCTCAAACTTCCGTGTCTGAAGAAAAAACTGGGAGCAGCAGAAGGGTTCATTCTAATATAACGAAGAGAGAATACATGCTACGACAAAAGTCGCTTCATGTGGATAAAAACTTTCGAACATATGGACCGAAAGGCCCATCAAGAGCTGGAAAGGTGACTGGTTTGGGGAGTTTGATGTTGGATAAGAAACTAAAGTCTGTTTCAGGCTCCACTGCAGTAAACTTTAAGAATGCTTCGCTGAAAATAAGCAAGGCTATGGGAATTGATGTGGCCCAAGACAATGGAAACCATAATCCTACCACCATCGACATTCCTTCTTCCTCTCTATCATTTAACTTGGAAAACAATAAAAATGCTTCTCCTTTTTCTAAGATCAATGTACTATCTTCAATGCCTGCACCTAGTTCACCACTTGCATTACCAGCTACTAATACTTCTTCTGCACTACCAGCAGCTGAAACCGATCTTTCTCTTTCTTTGCCCACTAAAAGCAATGAGCCCTCGGTGCCTATCAGCTGCAATGCTGAGCCTTCTACGAGTAGTTTTGTTGAGAAGCCTTATGAAAAGTCCCTTGGGCAGTGGTTTCCTAAGGATAAGAAGGATGAGATGGTTTTGAAATTAGTACCAAGAGCTCGGGAATTACAAAGTCAGTTGCAAGAGTGGATGGAGTGGGCCAATCAAAAGGTCATGCAGGCTGCAAGGAGGCTAAGTAAGGACAAGGCTGAACTAAAGACTTTGAAGCAAGAAAAGGAGGAAGTTGAACGGCTGAAAAAGGAGAAGCAGACTTTGGAGGAAAATACCAAGAAGAAGCTTTCTGAGATGGAACAGGCATTGTGCAAGGCTAGTGGGCAGGTTGAACTTGCTAACTCTGCTGTTAGAAGGCTTGAGGTGGAGAATGCTGCTCTACGACAGGAGATGGAGGTTGCAAAATTACGGGCTACAGAATCAGCTGCTACCTATCAGGAGGTTTCTAAGAGGGAAAAGAAAACACTAGTAAACGTTCAATCATGGGAGAAGACGAAAATGTTGTTTCAGGAAGAACACACAGTCGAAAAACGAAAATTGAAACAACTAATACAGGAACTTGAGCAGGCCAGGGATGTCCAGGAACAACTTGAGGGTAGAGGGAAAATGGAGGCGAGAGCAAAAGATGAGCTGCTCATGCAGGCTGCTTCATTGAGAAAGGAGAGAGAACAAATTGAAGCTTCATTGAAAGCAAAGGAGGATACAATAAAATTGAAAGCAGAAAACAATCTTTTGAAGTACAAAAGCGATATCCAAAAGCTTGAAAAAGAAATATCTCAGTTGAGACTTAAGACAGATTCTTCCAGAATTGCTGCTCTTAAGAGAGGCATAGACGGAAGTTATGCCAGTAGGCTTGTAGATACCAGAAACAGCACAGATCACAACGAGTCCTGGACCCCGAATGTCTCGGAATCGATGAAGGATCTTTACGAGTACTCTGGAACTGGGAGTGTGAAGCGGGAACGGGAGTGTGTAATGTGTCTTTCGGAGGAGATGTCGGTAGTGTTTCTTCCATGCGCCCATCAGGTGGTGTGCACAACCTGCAATGAACTACATGAAAAACAAGGTATGAAAGATTGTCCTTCTTGTAGGAGCCCGATACAGCGGCGTATTCCAGTCCGTTATACTCGCTCGTAA 2706 43.02 MASMVAKPSCPANSNHGPSSVLVQEKGSRNKRKYRADPPLGDLNKITSSSQDECPSYDFSAEKFEISSSLGQIGACDLCSTSQEFSAGLKLDLGLSNGGSPDVGIDWPRGELEVDEFQDVDWSDLTEAQLVELILCNLDTIFKAAIKKVVASGFTEEVAIKAVSRSGICFGCKDIMSNVVDNTLAFLRSGQEIDQSREHYFEDLQQLEKYILAELVCVLREVRPYFSTGDAMWCLLVSDMSVSHACTMDSDPSNAVVCDGTSNEGSTNSTPQLKAEAKSSELNFPKPLKPISPISCAHSSQSDGPATLGVPNLTKPKDPLFTSVSVSDKELQNSTSDVARESFNVGGNPQTSVSEEKTGSSRRVHSNITKREYMLRQKSLHVDKNFRTYGPKGPSRAGKVTGLGSLMLDKKLKSVSGSTAVNFKNASLKISKAMGIDVAQDNGNHNPTTIDIPSSSLSFNLENNKNASPFSKINVLSSMPAPSSPLALPATNTSSALPAAETDLSLSLPTKSNEPSVPISCNAEPSTSSFVEKPYEKSLGQWFPKDKKDEMVLKLVPRARELQSQLQEWMEWANQKVMQAARRLSKDKAELKTLKQEKEEVERLKKEKQTLEENTKKKLSEMEQALCKASGQVELANSAVRRLEVENAALRQEMEVAKLRATESAATYQEVSKREKKTLVNVQSWEKTKMLFQEEHTVEKRKLKQLIQELEQARDVQEQLEGRGKMEARAKDELLMQAASLRKEREQIEASLKAKEDTIKLKAENNLLKYKSDIQKLEKEISQLRLKTDSSRIAALKRGIDGSYASRLVDTRNSTDHNESWTPNVSESMKDLYEYSGTGSVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPVRYTRS 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1514081 1518511 - Cp4.1LG08g04370.1 Cpe08g00228 473194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00228 901 MobiDBLite consensus disorder prediction 294 308 - -
Cpe08g00228 901 MobiDBLite consensus disorder prediction 1 52 - -
Cpe08g00228 901 Coils Coil 693 723 - -
Cpe08g00228 901 Coils Coil 577 625 - -
Cpe08g00228 901 MobiDBLite consensus disorder prediction 318 357 - -
Cpe08g00228 901 SUPERFAMILY RING/U-box 846 894 - -
Cpe08g00228 901 Coils Coil 731 758 - -
Cpe08g00228 901 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 826 897 IPR013083 -
Cpe08g00228 901 MobiDBLite consensus disorder prediction 260 277 - -
Cpe08g00228 901 Pfam Zinc finger, C3HC4 type (RING finger) 844 892 - -
Cpe08g00228 901 PANTHER OS05G0141500 PROTEIN 14 900 IPR046934 -
Cpe08g00228 901 Coils Coil 633 660 - -
Cpe08g00228 901 MobiDBLite consensus disorder prediction 8 25 - -
Cpe08g00228 901 MobiDBLite consensus disorder prediction 260 279 - -
Cpe08g00228 901 PANTHER OS05G0141500 PROTEIN 14 900 - -
Cpe08g00228 901 Coils Coil 760 794 - -
Cpe08g00228 901 MobiDBLite consensus disorder prediction 293 364 - -
Cpe08g00228 901 Pfam Family of unknown function (DUF6592) 138 248 IPR046527 -
Cpe08g00228 901 ProSiteProfiles Zinc finger RING-type profile. 847 887 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00228 - - - csv:101214366 1507.27
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01402 Cpe08g00228 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00228 Cpe-Chr8:1514081 Cpe14g00951 Cpe-Chr14:8023025 1.77E-79 dispersed
Cpe03g01402 Cpe-Chr3:11305170 Cpe08g00228 Cpe-Chr8:1514081 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g397 . . . . . Bpe14g01163 . . . . . Cma14g01661 Car06g01249 Car14g01494 . Cpe08g00228 Cpe03g01402 Bhi01g00890 . . . Hepe05g1501 . Lcy11g1476 . . . . . . . . . . . Lsi05g01477 . . Cme06g00668 . . . . . Bpe13g00635 . Bma06g01529 . . Cmo14g01705 . . . . . . . . . . . . . Cla05g00597 Cam05g0657 Cec05g0664 Cco05g0661 Clacu05g0650 Cmu05g0619 Cre05g0688 . Csa03g01393 Chy06g00636 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004013 2 1 1 2 2 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 3 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00228 Cpe_Chr08 FPKM 0.367876 0.518382 0.0 0.0 0.0 0.0 0.0 0.0 0.312342 0.45072