Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00232 GTGCAAGAAATGGCTCAGATTTTAGCTCCATCTACTCAATGTCAACTGAGAACTAAACAGAGTTCAATGGGTGGAAGCCCCATAACCCCCAAGATGTGGAGTTCTTTACTTATGAAGCAGAGCAAGAAAGGAGGTGTGAAAAGCTCAGCAAAATTCAGAGTTTTGGCTCTCAAATCTGATGGTAGCACCATAAACAGGATGGAAGATCTGCTAAAACTGGACGTTACTCCATACACTGACAAGATCATTGCTGAATATATCTGCTCATCTCGATACTCTAAAGGCGTCTCGATACGATCTTCGCTCTATCTCTATCTCTATCCTGCAATCTTCATCCCCTTGTTCTTCATCCGCCATTATCGACGAAGAAACCCACTTCTGGGTTCGATTTTCCTGCCACTCTCCGGCACTTCTCTTGTGCAAGAAATGGCTCAGATTTTAGCTCCATCTACTCAATGTCAACTGAGAACTAAACAGAGTTCAATGGGTGGAAGCCCCATAACCCCCAAGATGTGGAGTTCTTTACTTATGAAGCAGAGCAAGAAAGGAGGTGTGAAAAGCTCAGCAAAATTCAGAGTTTTGGCTCTCAAATCTGATGGTAGCACCATAAACAGGATGGAAGATCTGCTAAAACTGGACGTTACTCCATACACTGACAAGATCATTGCTGAATATATCTGGATTGGAGGATCTGGCATTGATTTGCGTAGTAAGTCAAGGACCATTTCAAAGCCTGTTGAACATCCATCTGAGCTACCTAAGTGGAACTACGATGGATCTAGTACTGGACAAGCACCTGGGGAAGACAGTGAAGTCATTCTATATCCTCAAGCAATTTTCAAGGATCCCTTCCGTGGTGGCAACAATATTTTGGTGATTTGTGATGCATACACACCAGCAGGTGAGCCCATCCCTACGAACAAACGCCACCGAGCTGCTGAGATTTTCAGCAACAAGAAGGTTGTGGATGAAGTTCCTTGGTATGGAATTGAGCAAGAGTACACCTTACTTCAGACAAATGTGAAGTGGCCATTAGGTTGGCCTGTTGGAGCTTATCCTGGACCTCAGGGTCCTTATTACTGTGGTGTCGGGGCCGATAAGTCGTTTGGTCGAGATATATCAGATGCTCACTACAAGGCTTGTTTATACGCCGGGATCAACATTAGTGGTACCAATGGAGAAGTCATGCCTGGCCAGTGGGAGTTTCAAGTTGGTCCTAGTGTTGGGATTGAAGCAGGAGATCATATTTGGTGTGCTAGATACATTCTTGAGAGAATTACCGAGCAAGCTGGGGTGGTTCTCTCACTTGATCCAAAACCAATTGAGGGTGACTGGAATGGAGCAGGATGCCACACCAATTACAGTACGAAGAGCATGAGAGAGGAAGGAGGGTTTGAAGTCATAAAGAAGGCTATTCTGAATCTGTCTCTTCGCCACAAGGAGCATATCAGTGCCTATGGAGAAGGAAATGAGAGGAGGTTGACAGGGAAGCACGAAACAGCAAGTATCAACTCCTTTTCCTGGGGAGTGGCTAACCGTGGTTGTTCGATCCGTGTGGGACGTGACACTGAGAAAGAAGGCAAAGGTTATTTGGAAGACCGACGTCCCGCTTCAAACATGGACCCATACGTCGTGACCTCACTGCTGGCAGAATCAACACTACTGTGGGAGCCAACACTCGAAGCTGAAGCACTTGCTGCTCAGAAACTGGCATTGAAGGTCTAG 1725 45.86 VQEMAQILAPSTQCQLRTKQSSMGGSPITPKMWSSLLMKQSKKGGVKSSAKFRVLALKSDGSTINRMEDLLKLDVTPYTDKIIAEYICSSRYSKGVSIRSSLYLYLYPAIFIPLFFIRHYRRRNPLLGSIFLPLSGTSLVQEMAQILAPSTQCQLRTKQSSMGGSPITPKMWSSLLMKQSKKGGVKSSAKFRVLALKSDGSTINRMEDLLKLDVTPYTDKIIAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPAGEPIPTNKRHRAAEIFSNKKVVDEVPWYGIEQEYTLLQTNVKWPLGWPVGAYPGPQGPYYCGVGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIEAGDHIWCARYILERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASINSFSWGVANRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTSLLAESTLLWEPTLEAEALAAQKLALKV 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1528902 1533341 - Cp4.1LG08g04420.1 Cpe08g00232 473198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00232 574 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 221 301 IPR008147 GO:0004356|GO:0006542|GO:0006807
Cpe08g00232 574 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 439 455 IPR027303 -
Cpe08g00232 574 PANTHER GLUTAMINE SYNTHETASE 203 557 - -
Cpe08g00232 574 Pfam Glutamine synthetase, catalytic domain 370 549 IPR008146 GO:0004356|GO:0006807
Cpe08g00232 574 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 306 558 - -
Cpe08g00232 574 Pfam Glutamine synthetase, beta-Grasp domain 224 299 IPR008147 GO:0004356|GO:0006542|GO:0006807
Cpe08g00232 574 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 305 574 IPR008146 GO:0004356|GO:0006807
Cpe08g00232 574 SMART Gln_synt_C_2 305 553 IPR008146 GO:0004356|GO:0006807
Cpe08g00232 574 SUPERFAMILY Glutamine synthetase, N-terminal domain 219 304 IPR036651 GO:0004356|GO:0006542|GO:0006807
Cpe08g00232 574 ProSitePatterns Glutamine synthetase signature 1. 257 274 IPR027302 -
Cpe08g00232 574 Coils Coil 574 574 - -
Cpe08g00232 574 Gene3D - 203 305 IPR036651 GO:0004356|GO:0006542|GO:0006807
Cpe08g00232 574 SUPERFAMILY Glutamine synthetase/guanido kinase 306 555 IPR014746 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00232 K01915 glnA, GLUL; glutamine synthetase [EC:6.3.1.2] - csv:101212441 821.231
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01408 Cpe08g00232 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01445 Cpe-Chr2:12470421 Cpe08g00232 Cpe-Chr8:1528902 0 dispersed
Cpe03g00718 Cpe-Chr3:4367223 Cpe08g00232 Cpe-Chr8:1528902 0 dispersed
Cpe08g00232 Cpe-Chr8:1528902 Cpe17g00716 Cpe-Chr17:5710636 0 dispersed
Cpe03g01408 Cpe-Chr3:11343739 Cpe08g00232 Cpe-Chr8:1528902 1.34E-124 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g412 . . Bda03g01264 . . . Bma04g01174 . . . . Cma14g01668 Car06g01245 Car14g01502 Sed02g1281 Cpe08g00232 Cpe03g01408 Bhi01g00873 Tan10g0907 Cmetu06g1518 . . . . . . . . . . . . . Cone7ag0205 Cone4ag0196 Lsi05g01467 . . Cme06g00659 . . . Bda13g00143 . . . . . Cmo06g01445 Cmo14g01714 . . . . . . . . . . . . . . . . . . . . . Csa03g01384 Chy06g00627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000333 5 5 3 4 4 4 2 4 4 4 4 4 7 3 4 8 4 8 7 4 4 4 2 4 4 3 4 9 5 5 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00232 Cpe_Chr08 FPKM 1.523224 1.430342 2.445822 2.601187 0.899436 0.154544 1.068684 2.556776 2.456151 3.080994