Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00235 ATGTCAGGCCCTCAGTGCTGCTCGAACCCACCGTCTCTAAACCCCTCCAGTGGCGCCGGCCATGTCGAACAACTCGGCGGCCTCAGCACCTATGTCAGTGGCGCCCCCGACTCCAAAAACGCCGTCATTTTCATCACCGATGTCTATGGATATGAAGCTCCACTCTTAAGGAAGCTAGCAGATAAGGTTGCAGCTGCTGGGTTCTTTGTGGTTGCTCCTGATTTCTTCAAGGGAGATCCATATGTTGCAAATGATCCTAATAGGCCAATTAAAGAGTGGCTACAAGAACATGGACCTGAGAAGTCTTTCGATGATGGGAAGGCAGTCGTCGAAGCTCTGAAAAGCAAAGGTATTTCGGCGATCGGAGCGGTCGGCATTTGTTGGGGTGCCAAGGTTGTGGTTGCACTTGCGAAGGTCGAGTTGATTCAAGCTGCTGTAAAAGCTCACGTTTCAGTGCTAGGGGCGGAGATCGATCATATGTCTCCTCCAGAACTCTTGAAACAGTTTGAAGAGGCCTTGGCTGCAAAGCCTGAGGTTGATGGGTTCGTGAAGATCTTTCCGAAAGTCTCTCATGGGTGGACTGTGAGGTACAATGTTGAAGATGAAGAGGCGGTCAAATGTGCAGATGAGGCTCATGGAGACTTGTTGGCTTGGTTTACTAAGTACCTTAAGAAGCTAGCAGATAAGGTTGCAGCTGCTGGGTTCTTTGTGGTTGCTCCTGATTTCTTCAAGGGAGATCCATATGTTGCAAATGATCCTAATAGGCCAATTAAAGAGTGGCTACAAGAACATGGACCTGAGAAGTCTTTCGATGATGGGAAGGCAGTCGTCGAAGCTCTGAAAAGCAAAGGTATTTCGGCGATCGGAGCGGTCGGCATTTGTTGGGGTGAGGTAAAAGCTCACGTTTCAGTGCTAGGGGCGGAGATCGATCATATGTCTCCTCCAGAACTCTTGAAACAGTTTGAAGAGGCCTTGGCTGCAAAGCCTGAGGTAGTGAGAGTTGTTTTAGTTGAGTTCTTATCATATCGT 1029 48.88 MSGPQCCSNPPSLNPSSGAGHVEQLGGLSTYVSGAPDSKNAVIFITDVYGYEAPLLRKLADKVAAAGFFVVAPDFFKGDPYVANDPNRPIKEWLQEHGPEKSFDDGKAVVEALKSKGISAIGAVGICWGAKVVVALAKVELIQAAVKAHVSVLGAEIDHMSPPELLKQFEEALAAKPEVDGFVKIFPKVSHGWTVRYNVEDEEAVKCADEAHGDLLAWFTKYLKKLADKVAAAGFFVVAPDFFKGDPYVANDPNRPIKEWLQEHGPEKSFDDGKAVVEALKSKGISAIGAVGICWGEVKAHVSVLGAEIDHMSPPELLKQFEEALAAKPEVVRVVLVEFLSYR 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1542073 1547499 - Cp4.1LG08g04430.1 Cpe08g00235 473201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00235 343 MobiDBLite consensus disorder prediction 1 19 - -
Cpe08g00235 343 SUPERFAMILY alpha/beta-Hydrolases 27 224 IPR029058 -
Cpe08g00235 343 MobiDBLite consensus disorder prediction 1 20 - -
Cpe08g00235 343 PANTHER DIENELACTONE HYDROLASE 1 223 - -
Cpe08g00235 343 PANTHER DIENELACTONE HYDROLASE 223 296 - -
Cpe08g00235 343 PANTHER DIENELACTONE HYDROLASE 297 335 - -
Cpe08g00235 343 SUPERFAMILY alpha/beta-Hydrolases 224 335 IPR029058 -
Cpe08g00235 343 PANTHER ENDO-1,3-1,4-BETA-D-GLUCANASE-LIKE PROTEIN 223 296 - -
Cpe08g00235 343 PANTHER ENDO-1,3-1,4-BETA-D-GLUCANASE-LIKE PROTEIN 297 335 - -
Cpe08g00235 343 Gene3D alpha/beta hydrolase 223 296 IPR029058 -
Cpe08g00235 343 Gene3D alpha/beta hydrolase 23 222 IPR029058 -
Cpe08g00235 343 Pfam Dienelactone hydrolase family 31 222 IPR002925 GO:0016787
Cpe08g00235 343 Pfam Dienelactone hydrolase family 223 296 IPR002925 GO:0016787
Cpe08g00235 343 PANTHER ENDO-1,3-1,4-BETA-D-GLUCANASE-LIKE PROTEIN 1 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00235 - - - csv:101211476 370.548
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g419 . . . . . . . . . . Cma06g01440 . Car06g01242 . . Cpe08g00235 . Bhi01g00866 Tan10g0900 Cmetu09g0387 . Hepe05g1515 . Lcy11g1494 . . . . . . . Cone14ag0814 Cone15ag0812 . Cone4ag0199 Lsi05g01462 . . Cme06g00652 . . . . . . . . . Cmo06g01442 . . . . . . . . . . . . . . Cla05g00584 Cam05g0642 Cec05g0651 Cco05g0646 Clacu05g0636 Cmu05g0604 Cre05g0673 . Csa03g01379 Chy06g00621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002887 1 2 1 1 0 2 1 2 2 1 2 2 1 2 1 1 2 2 1 2 1 4 1 4 3 2 1 2 2 5 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00235 Cpe_Chr08 FPKM 8.874377 9.589769 21.947857 17.10458 12.557145 9.913584 12.153252 25.54563 24.205046 23.659956