Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe08g00242 | ATGGGTATTTCATGGAGTAACAGAAGAAGAAACAATTATCTTCAAAACCCACCTCCGCCCTACCATTCTTCTTCCTCCTTCTATTACCCTTCTGAACCCACATCCCTTCCTCCGCCGCCGCAGACCCATCACTTCCCCAATTCCCACCCTCCTCCGCCGCACAGCCACCCTTACACTCCAACTCCCCAGCCGATACCCTTGCCGCCGATTCCTCCTGCCCCTGCTCCTCACTCCTATTACTTTTCTGGTGGGTACAATTCGTGTAATTATGGGAACTCTCCGATGGGGCGTTTCAATTTCCACCCTCATTATGCCAATCAGAGTAATGGGTGGTCTCAAATTCGGCCGGTGATGGTGCCGCCGTTTCTTCCGCCACCGTCTTTGCCGTTTGTAGAGCATCGACAGGCGAAGAAGGTTAGGAATGATGTGAATGTGCATAAGGATACTTTGAGGATTGAGGTGGATGGACAGAATCCTGATCAGCATTTGGTTTCTTTCGTGTTTGATGCGTTGTATGATGGAAGCATTACCATCCTATTTTTTGCCAAGGAAGAGCCCAACTGTAGGTTTGTTCCAATATATCCCGACGCCTTTAAGCCAGTAAAAATCCCATTTCAAAAGGGTCCTGCTCAGAAATTCTTTCAGCCTATGGGAACTGGCTTTGACTTGGGATTTTTCGAGTTGGATGACCTCTCAAAACCTTCGCCTTCTGAAGACGTTTTCCCGCTCGTTATATCAGCTGAGACTTGCTCACCCTCTCAGTCCAATGATGAACGAATTGGTGAGCCTCAACCAGATAATTCACATATGCAAATCACTCAAGCTGTTCTGGAGAAGAAAAATGGCAATCCTTTCCAAGTTAAGGTGATCCGGCAACTACTATGGATTGATGGAATGCGTTATGAGTTGCGTGAGATATTCGGTATAGGGAGTTCGTCTTCAGAAGGTTTTGACAATAACGACTCCGGGAAGGAGTGTGTGATTTGCATGACCGAACCCAAGGATACTGCTGTATTACCATGTCGACATATGTGCATGTGCAGTGAGTGTGCCAAGGAACTGAAGCTTCAATCTAATAAATGTCCGATTTGTCGTCAACCGATCGAAGAACTTATAGAAATCAAGATAAATAATAGCAATCAGTGA | 1146 | 46.25 | MGISWSNRRRNNYLQNPPPPYHSSSSFYYPSEPTSLPPPPQTHHFPNSHPPPPHSHPYTPTPQPIPLPPIPPAPAPHSYYFSGGYNSCNYGNSPMGRFNFHPHYANQSNGWSQIRPVMVPPFLPPPSLPFVEHRQAKKVRNDVNVHKDTLRIEVDGQNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDAFKPVKIPFQKGPAQKFFQPMGTGFDLGFFELDDLSKPSPSEDVFPLVISAETCSPSQSNDERIGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSSSEGFDNNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIKINNSNQ | 381 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 1585153 | 1587813 | + | Cp4.1LG08g04470.1 | Cpe08g00242 | 473208 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe08g00242 | 381 | MobiDBLite | consensus disorder prediction | 32 | 69 | - | - | |
| Cpe08g00242 | 381 | SMART | ring_2 | 326 | 364 | IPR001841 | - | |
| Cpe08g00242 | 381 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 325 | 365 | IPR045195 | - | |
| Cpe08g00242 | 381 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Cpe08g00242 | 381 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 313 | 375 | IPR013083 | - | |
| Cpe08g00242 | 381 | Pfam | Zinc finger, C3HC4 type (RING finger) | 324 | 370 | - | - | |
| Cpe08g00242 | 381 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
| Cpe08g00242 | 381 | ProSiteProfiles | Zinc finger RING-type profile. | 326 | 365 | IPR001841 | - | |
| Cpe08g00242 | 381 | PANTHER | MAHOGUNIN | 1 | 380 | IPR045194 | GO:0061630 | |
| Cpe08g00242 | 381 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED | 1 | 380 | - | - | |
| Cpe08g00242 | 381 | SUPERFAMILY | RING/U-box | 325 | 371 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe03g01415 | Cpe08g00242 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe03g00177 | Cpe-Chr3:875385 | Cpe08g00242 | Cpe-Chr8:1585153 | 4.40E-91 | dispersed | |
| Cpe08g00242 | Cpe-Chr8:1585153 | Cpe08g01101 | Cpe-Chr8:8334004 | 5.65E-98 | dispersed | |
| Cpe03g01415 | Cpe-Chr3:11379203 | Cpe08g00242 | Cpe-Chr8:1585153 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe08g00242 | - | - | csv:101203938 | 616.69 |