Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00242 ATGGGTATTTCATGGAGTAACAGAAGAAGAAACAATTATCTTCAAAACCCACCTCCGCCCTACCATTCTTCTTCCTCCTTCTATTACCCTTCTGAACCCACATCCCTTCCTCCGCCGCCGCAGACCCATCACTTCCCCAATTCCCACCCTCCTCCGCCGCACAGCCACCCTTACACTCCAACTCCCCAGCCGATACCCTTGCCGCCGATTCCTCCTGCCCCTGCTCCTCACTCCTATTACTTTTCTGGTGGGTACAATTCGTGTAATTATGGGAACTCTCCGATGGGGCGTTTCAATTTCCACCCTCATTATGCCAATCAGAGTAATGGGTGGTCTCAAATTCGGCCGGTGATGGTGCCGCCGTTTCTTCCGCCACCGTCTTTGCCGTTTGTAGAGCATCGACAGGCGAAGAAGGTTAGGAATGATGTGAATGTGCATAAGGATACTTTGAGGATTGAGGTGGATGGACAGAATCCTGATCAGCATTTGGTTTCTTTCGTGTTTGATGCGTTGTATGATGGAAGCATTACCATCCTATTTTTTGCCAAGGAAGAGCCCAACTGTAGGTTTGTTCCAATATATCCCGACGCCTTTAAGCCAGTAAAAATCCCATTTCAAAAGGGTCCTGCTCAGAAATTCTTTCAGCCTATGGGAACTGGCTTTGACTTGGGATTTTTCGAGTTGGATGACCTCTCAAAACCTTCGCCTTCTGAAGACGTTTTCCCGCTCGTTATATCAGCTGAGACTTGCTCACCCTCTCAGTCCAATGATGAACGAATTGGTGAGCCTCAACCAGATAATTCACATATGCAAATCACTCAAGCTGTTCTGGAGAAGAAAAATGGCAATCCTTTCCAAGTTAAGGTGATCCGGCAACTACTATGGATTGATGGAATGCGTTATGAGTTGCGTGAGATATTCGGTATAGGGAGTTCGTCTTCAGAAGGTTTTGACAATAACGACTCCGGGAAGGAGTGTGTGATTTGCATGACCGAACCCAAGGATACTGCTGTATTACCATGTCGACATATGTGCATGTGCAGTGAGTGTGCCAAGGAACTGAAGCTTCAATCTAATAAATGTCCGATTTGTCGTCAACCGATCGAAGAACTTATAGAAATCAAGATAAATAATAGCAATCAGTGA 1146 46.25 MGISWSNRRRNNYLQNPPPPYHSSSSFYYPSEPTSLPPPPQTHHFPNSHPPPPHSHPYTPTPQPIPLPPIPPAPAPHSYYFSGGYNSCNYGNSPMGRFNFHPHYANQSNGWSQIRPVMVPPFLPPPSLPFVEHRQAKKVRNDVNVHKDTLRIEVDGQNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDAFKPVKIPFQKGPAQKFFQPMGTGFDLGFFELDDLSKPSPSEDVFPLVISAETCSPSQSNDERIGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSSSEGFDNNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIKINNSNQ 381
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 1585153 1587813 + Cp4.1LG08g04470.1 Cpe08g00242 473208
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00242 381 MobiDBLite consensus disorder prediction 32 69 - -
Cpe08g00242 381 SMART ring_2 326 364 IPR001841 -
Cpe08g00242 381 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 325 365 IPR045195 -
Cpe08g00242 381 MobiDBLite consensus disorder prediction 1 31 - -
Cpe08g00242 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 375 IPR013083 -
Cpe08g00242 381 Pfam Zinc finger, C3HC4 type (RING finger) 324 370 - -
Cpe08g00242 381 MobiDBLite consensus disorder prediction 1 69 - -
Cpe08g00242 381 ProSiteProfiles Zinc finger RING-type profile. 326 365 IPR001841 -
Cpe08g00242 381 PANTHER MAHOGUNIN 1 380 IPR045194 GO:0061630
Cpe08g00242 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 380 - -
Cpe08g00242 381 SUPERFAMILY RING/U-box 325 371 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cpe03g01415 Cpe08g00242 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00177 Cpe-Chr3:875385 Cpe08g00242 Cpe-Chr8:1585153 4.40E-91 dispersed
Cpe08g00242 Cpe-Chr8:1585153 Cpe08g01101 Cpe-Chr8:8334004 5.65E-98 dispersed
Cpe03g01415 Cpe-Chr3:11379203 Cpe08g00242 Cpe-Chr8:1585153 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00242 - - csv:101203938 616.69