Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe08g00243 | ATGGCTCATATTGCTGTGGAGAGGAATAGGAGAAGGCAGATGAATGAACATCTTAGGGTTTTGAGAACTTTGACACCTTGTTTCTATATCAAAAGGGGAGATCAAGCGTCGATAATTGGGGGAGTGATCGAGTTCATTAAGGAGTTGCATCAGGTTTTGCAATCGTTGGAGTCGAACAAACGGAGGAGGAAGAGTGTAAGTCCGAGCCCGAGTCCGAGACCGTTGGTGGCGGTTGCCGATGGATTTGAAAATGGAGTTGATGTCGGAGCTTGTTGTAACTCGTCGGTGGCGGATGTCGAAGCGAAGATTTCAGGTTCGAACGTGCTGTTGAAGATCATTTCTCGACGAATTCCCGGGCAACTTTCGAAGATGATTAGTGTGTTGGAGAGGCTGTCGTTTGAGGTTCTTCATCTCAACATCAGTAGTATGGATGACACTGTTCTTTACTCTTTTGTTGTCAAGCAAAACATGGCTCATATTGCTGTGGAGAGGAATAGGAGAAGGCAGATGAATGAACATCTTAGGGTTTTGAGAACTTTGACACCTTGTTTCTATATCAAAAGGGGAGATCAAGCGTCGATAATTGGGGGAGTGATCGAGTTCATTAAGGAGTTGCATCAGGTTTTGCAATCGTTGGAGTCGAACAAACGGAGGAGGAAGAGTGTAAGTCCGAGCCCGAGTCCGAGGCCGTTGGTGGCGGTTGCCGATGGATTTGAAAATGGAGTTGATGTCGGAGCTTGTTGTAACTCGTCGGTGGCGGATGTCGAAGCGAAGATTTCAGGTTCGAACGTGCTGTTGAAGATCATTTCTCGACGAATTCCCGGGCAACTTTCGAAGATGATTAGTGTGTTGGAGAGGCTGTCGTTTGAGGTTCTTCATCTCAACATCAGTAGTATGGATGACACTGTTCTTTACTCTTTTGTTGTCAAGATAGGGCTTGAATGTCAGCTAAGTTTGGATGAATTAGCCTTTGAAGTTCAACAAAGCTTCTGCTCTCAACTTTACTTATGCCAG | 1014 | 45.56 | MAHIAVERNRRRQMNEHLRVLRTLTPCFYIKRGDQASIIGGVIEFIKELHQVLQSLESNKRRRKSVSPSPSPRPLVAVADGFENGVDVGACCNSSVADVEAKISGSNVLLKIISRRIPGQLSKMISVLERLSFEVLHLNISSMDDTVLYSFVVKQNMAHIAVERNRRRQMNEHLRVLRTLTPCFYIKRGDQASIIGGVIEFIKELHQVLQSLESNKRRRKSVSPSPSPRPLVAVADGFENGVDVGACCNSSVADVEAKISGSNVLLKIISRRIPGQLSKMISVLERLSFEVLHLNISSMDDTVLYSFVVKIGLECQLSLDELAFEVQQSFCSQLYLCQ | 338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1599539 | 1601549 | - | Cp4.1LG08g04260.1 | Cpe08g00243 | 473209 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe08g00243 | 338 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 154 | 205 | IPR011598 | GO:0046983 | |
Cpe08g00243 | 338 | Pfam | Helix-loop-helix DNA-binding domain | 157 | 205 | IPR011598 | GO:0046983 | |
Cpe08g00243 | 338 | Pfam | Helix-loop-helix DNA-binding domain | 2 | 49 | IPR011598 | GO:0046983 | |
Cpe08g00243 | 338 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 1 | 49 | IPR011598 | GO:0046983 | |
Cpe08g00243 | 338 | Gene3D | - | 153 | 221 | IPR036638 | GO:0046983 | |
Cpe08g00243 | 338 | Gene3D | - | 1 | 65 | IPR036638 | GO:0046983 | |
Cpe08g00243 | 338 | PANTHER | TRANSCRIPTION FACTOR FAMA | 1 | 154 | IPR044283 | GO:0003700|GO:0010052 | |
Cpe08g00243 | 338 | PANTHER | TRANSCRIPTION FACTOR FAMA | 157 | 335 | IPR044283 | GO:0003700|GO:0010052 | |
Cpe08g00243 | 338 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 1 | 64 | IPR036638 | GO:0046983 | |
Cpe08g00243 | 338 | SMART | finulus | 4 | 55 | IPR011598 | GO:0046983 | |
Cpe08g00243 | 338 | SMART | finulus | 160 | 211 | IPR011598 | GO:0046983 | |
Cpe08g00243 | 338 | PANTHER | TRANSCRIPTION FACTOR MUTE | 1 | 154 | - | - | |
Cpe08g00243 | 338 | PANTHER | TRANSCRIPTION FACTOR MUTE | 157 | 335 | - | - | |
Cpe08g00243 | 338 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 156 | 220 | IPR036638 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g00243 | Cpe-Chr8:1599539 | Cpe14g00057 | Cpe-Chr14:313862 | 1.03E-44 | dispersed | |
Cpe09g00043 | Cpe-Chr9:252234 | Cpe08g00243 | Cpe-Chr8:1599539 | 8.74E-15 | dispersed | |
Cpe03g01591 | Cpe-Chr3:12276560 | Cpe08g00243 | Cpe-Chr8:1599539 | 1.16E-44 | transposed | |
Cpe11g00947 | Cpe-Chr11:8017880 | Cpe08g00243 | Cpe-Chr8:1599539 | 4.35E-32 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49833 | PF00010 | HLH | 1.30E-07 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe08g00243 | - | - | csv:101203445 | 305.834 |