Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00243 ATGGCTCATATTGCTGTGGAGAGGAATAGGAGAAGGCAGATGAATGAACATCTTAGGGTTTTGAGAACTTTGACACCTTGTTTCTATATCAAAAGGGGAGATCAAGCGTCGATAATTGGGGGAGTGATCGAGTTCATTAAGGAGTTGCATCAGGTTTTGCAATCGTTGGAGTCGAACAAACGGAGGAGGAAGAGTGTAAGTCCGAGCCCGAGTCCGAGACCGTTGGTGGCGGTTGCCGATGGATTTGAAAATGGAGTTGATGTCGGAGCTTGTTGTAACTCGTCGGTGGCGGATGTCGAAGCGAAGATTTCAGGTTCGAACGTGCTGTTGAAGATCATTTCTCGACGAATTCCCGGGCAACTTTCGAAGATGATTAGTGTGTTGGAGAGGCTGTCGTTTGAGGTTCTTCATCTCAACATCAGTAGTATGGATGACACTGTTCTTTACTCTTTTGTTGTCAAGCAAAACATGGCTCATATTGCTGTGGAGAGGAATAGGAGAAGGCAGATGAATGAACATCTTAGGGTTTTGAGAACTTTGACACCTTGTTTCTATATCAAAAGGGGAGATCAAGCGTCGATAATTGGGGGAGTGATCGAGTTCATTAAGGAGTTGCATCAGGTTTTGCAATCGTTGGAGTCGAACAAACGGAGGAGGAAGAGTGTAAGTCCGAGCCCGAGTCCGAGGCCGTTGGTGGCGGTTGCCGATGGATTTGAAAATGGAGTTGATGTCGGAGCTTGTTGTAACTCGTCGGTGGCGGATGTCGAAGCGAAGATTTCAGGTTCGAACGTGCTGTTGAAGATCATTTCTCGACGAATTCCCGGGCAACTTTCGAAGATGATTAGTGTGTTGGAGAGGCTGTCGTTTGAGGTTCTTCATCTCAACATCAGTAGTATGGATGACACTGTTCTTTACTCTTTTGTTGTCAAGATAGGGCTTGAATGTCAGCTAAGTTTGGATGAATTAGCCTTTGAAGTTCAACAAAGCTTCTGCTCTCAACTTTACTTATGCCAG 1014 45.56 MAHIAVERNRRRQMNEHLRVLRTLTPCFYIKRGDQASIIGGVIEFIKELHQVLQSLESNKRRRKSVSPSPSPRPLVAVADGFENGVDVGACCNSSVADVEAKISGSNVLLKIISRRIPGQLSKMISVLERLSFEVLHLNISSMDDTVLYSFVVKQNMAHIAVERNRRRQMNEHLRVLRTLTPCFYIKRGDQASIIGGVIEFIKELHQVLQSLESNKRRRKSVSPSPSPRPLVAVADGFENGVDVGACCNSSVADVEAKISGSNVLLKIISRRIPGQLSKMISVLERLSFEVLHLNISSMDDTVLYSFVVKIGLECQLSLDELAFEVQQSFCSQLYLCQ 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1599539 1601549 - Cp4.1LG08g04260.1 Cpe08g00243 473209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00243 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 205 IPR011598 GO:0046983
Cpe08g00243 338 Pfam Helix-loop-helix DNA-binding domain 157 205 IPR011598 GO:0046983
Cpe08g00243 338 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Cpe08g00243 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Cpe08g00243 338 Gene3D - 153 221 IPR036638 GO:0046983
Cpe08g00243 338 Gene3D - 1 65 IPR036638 GO:0046983
Cpe08g00243 338 PANTHER TRANSCRIPTION FACTOR FAMA 1 154 IPR044283 GO:0003700|GO:0010052
Cpe08g00243 338 PANTHER TRANSCRIPTION FACTOR FAMA 157 335 IPR044283 GO:0003700|GO:0010052
Cpe08g00243 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 64 IPR036638 GO:0046983
Cpe08g00243 338 SMART finulus 4 55 IPR011598 GO:0046983
Cpe08g00243 338 SMART finulus 160 211 IPR011598 GO:0046983
Cpe08g00243 338 PANTHER TRANSCRIPTION FACTOR MUTE 1 154 - -
Cpe08g00243 338 PANTHER TRANSCRIPTION FACTOR MUTE 157 335 - -
Cpe08g00243 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 220 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00243 Cpe-Chr8:1599539 Cpe14g00057 Cpe-Chr14:313862 1.03E-44 dispersed
Cpe09g00043 Cpe-Chr9:252234 Cpe08g00243 Cpe-Chr8:1599539 8.74E-15 dispersed
Cpe03g01591 Cpe-Chr3:12276560 Cpe08g00243 Cpe-Chr8:1599539 1.16E-44 transposed
Cpe11g00947 Cpe-Chr11:8017880 Cpe08g00243 Cpe-Chr8:1599539 4.35E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49833 PF00010 HLH 1.30E-07 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00243 - - csv:101203445 305.834