Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00244 ATGGCGACCTCCACTTCCCTCTCCTTCTTCTCCTCTGTTCTCTTCCTCCTCTTCTCCGCCGTCGCCACAACCTCCTTCCGCCCCAAAGCTCTGGTTCTTCCGGTCACCAAACACCCTTCTCTCCAGTACATTACCCAGATCCGGCAACGAACCCCTCTGGTTCCGGTGAAGCTCACCGTCGACCTCGGTAGCCAGTTCATGTGGGTCGACTGTGACCGTGGCTACATTTCCTCCACCTACAAGCCTGCCCGTTGCCGCTCTGCTCAGTGCAACCTTGCTTCCAAGTCCAGCGGCTGCGGCCAGTGCTTCTCGCCGCCAAGACCCGGCTGCAATAACAACACCTGCAGTCTGTTCCCCGGAAATACCATTATTCATCTCTCCACTAGCGGCGAACTCGCCTCCGATGTCGTCTCTGTTTCCTCCACCGACGGATTTAATCCAACCAAGCCCGTCACGGTCCCGAATTTCCTCTTTGTCTGTGGGTCCACGTTTCTCCTCGACGGCCTCGCCGGCGGCGTAACCGGAATGGCCGGATTCGGACGGAACGGGATTTCTCTCCCATCCCAATTCTCCGCCGCCTTCAGCTTCAACAGAAAATTCGCCGTTTGCCTAAGCGGCTCCACCAGATTCCCCGGCGTAATCTTCTCCGGCAACGGCCCATACCATTTCTTACCCAACATCGACCTAACCGATTCCCTCACATACACCCCACTCTTCATCAACCCCGTCAGCACCGCCGGCGTCTTCTCCGCCGGCGAAAAATCCACCGAATATTTCATCGGCGTAAAATCCATCCTCATCAATTCCAAAACCGTCCCACTCAACACCACCCTCTTAAAAATCGACAGCAACGGCGTCGGCGGAACCAAAATCAGCACCGTCGATCCATACACCGTCTTAGAATCCTCAATTTACAACGCCGTGTTGAAAACCTTCACGACGGAGCTCAAGAACGTTCCAAGAGTAGCGGCGGTGGCGCCATTCGGAGCTTGTTTCAATGCGAAGAGCATTTCCAGCACCCGATTAGGACCAGGCGTGCCGTCAATTGAACTGATTTTGCAGAACAAGAAAGTGATTTGGAGAATATTCGGCGCGAACTCAATGGTACAGGTGAAGGACGACGTGCTGTGCTTGGGGTTCGTGGACGGTGGCGTGAACCCACGAACCTCGATCGTTATTGGGGCCCACCAGATTGAGGACAATTTACTCGAATTTGATATGGCCACTTCTAGGCTTGGATTTAGCGCCACTCTTCTGGGTCGGATGACCACGTGTGCTAATTTCAATTTTACCTCTAAACCTTGA 1305 54.25 MATSTSLSFFSSVLFLLFSAVATTSFRPKALVLPVTKHPSLQYITQIRQRTPLVPVKLTVDLGSQFMWVDCDRGYISSTYKPARCRSAQCNLASKSSGCGQCFSPPRPGCNNNTCSLFPGNTIIHLSTSGELASDVVSVSSTDGFNPTKPVTVPNFLFVCGSTFLLDGLAGGVTGMAGFGRNGISLPSQFSAAFSFNRKFAVCLSGSTRFPGVIFSGNGPYHFLPNIDLTDSLTYTPLFINPVSTAGVFSAGEKSTEYFIGVKSILINSKTVPLNTTLLKIDSNGVGGTKISTVDPYTVLESSIYNAVLKTFTTELKNVPRVAAVAPFGACFNAKSISSTRLGPGVPSIELILQNKKVIWRIFGANSMVQVKDDVLCLGFVDGGVNPRTSIVIGAHQIEDNLLEFDMATSRLGFSATLLGRMTTCANFNFTSKP 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1604268 1605572 + Cp4.1LG08g04280.1 Cpe08g00244 473210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00244 434 CDD xylanase_inhibitor_I_like 49 418 IPR033868 -
Cpe08g00244 434 PANTHER ASPARTYL PROTEASE-RELATED 9 433 IPR001461 GO:0004190|GO:0006508
Cpe08g00244 434 Gene3D Acid Proteases 23 218 IPR021109 -
Cpe08g00244 434 SUPERFAMILY Acid proteases 37 425 IPR021109 -
Cpe08g00244 434 ProSiteProfiles Peptidase family A1 domain profile. 43 415 IPR033121 -
Cpe08g00244 434 Pfam Xylanase inhibitor C-terminal 257 415 IPR032799 -
Cpe08g00244 434 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 9 433 - -
Cpe08g00244 434 Pfam Xylanase inhibitor N-terminal 43 218 IPR032861 -
Cpe08g00244 434 Gene3D Acid Proteases 219 432 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00244 - - - cmo:103483742 731.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00244 Cpe-Chr8:1604268 Cpe13g00033 Cpe-Chr13:270438 4.85E-27 dispersed
Cpe12g00223 Cpe-Chr12:1454517 Cpe08g00244 Cpe-Chr8:1604268 1.83E-96 wgd
Cpe17g00127 Cpe-Chr17:809268 Cpe08g00244 Cpe-Chr8:1604268 5.66E-64 wgd
Cpe17g00844 Cpe-Chr17:6557011 Cpe08g00244 Cpe-Chr8:1604268 3.83E-92 wgd
Cpe03g01416 Cpe-Chr3:11395550 Cpe08g00244 Cpe-Chr8:1604268 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g436 . . . Bda08g00394 . . . Bma05g00939 . . . . . . . Cpe08g00244 . . . . . . . . . . . . . . . . . . . . . . Cme06g00641 . . . . Bpe05g00757 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01367 Chy06g00610 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002462 3 1 0 5 3 2 2 2 1 3 1 2 2 3 3 2 2 4 2 2 3 1 1 1 1 1 2 2 1 3 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00244 Cpe_Chr08 FPKM 3.705628 2.084956 2.116276 2.749038 9.322399 15.785142 7.853467 1.193372 0.04874 1.161822