Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00256 ATGGGGAAGAATGATCACAGAGTTGAAGCTGTTCTTCAGCTTCTTCGTAAACAAGCTCCACTTTCAGTCAAACAGGACAAGTTCTGTAATACTGCTTGTGTTGAGCGGTTTCTCAAGGCCAAAGGAGACAATGTGAAGAAAGCTGCGAAGAGCTTGAGGGCTTGCCTTTCTTGGAGGGATAGCATCGGCATCGATCATCTAATTGCCGATGAATTCTCCGCTGAGCTTGCTGATGGCGTTGCTTATGTGGCTGGCCACGACGAAGAATCTCGCCCCGTTCACTCGTCTGGTAGTATTCACGCTAGAGGTTGCGATCGGGACCATGTCAAAGAACGTCGACCAAATGATCATACTTTTCGACGCAAGTCGGCTTCGGCTTTTATCAACTCACTTCTGCCCATGTTGAAGATCGTGGCTGATTTTTATCCTCGCCGCCTTCATTCCGCTTTTGTTATCGACCCACCTTCGCTCTTTACATATCTTTGGAAGGGTGTTCGACCGTTCGTTGAGCTATCAACGGTTACGATGGTAATTTCGTCTCTTGACTTTGAAGATTCGTTGGAGTTTAACGATTTCGCCGCCTATCCACGAGCCTCGTCCCTCCGATTTGATCAATCGTTAATGGAACCAACGGCTAAGATTGGCTCATCTGCATCCTCACGCTTCTCATTCACTGTATCCCACCATTTCGACTCACTCAAACCTTGGTACCTCAGTTTAACCGACACGTCAGCTTCCAAAGTGGGTCCCACCAGTCCTTCACCATTGGGTCCCGCACTGATCTCTCCACTCAACGCCCGTTCACTGTCGTTCGCATCACCGGCTGCTAGAACGCCACGTGGTGGAATCAACGATGGGAATTACAGCTCGAGGCTGACGAGAAAAAGCTTGTTCCCGTCGACGCCGATGCCGCCGAAGAGCGCCGCCATGGCCAGCGGAGGAGGGAAAAAGGTCAACCACCCACGGACACCAAGACCGTCGTTCCTGCAATCGCCGGCGGTGTTCTTCAGGAGAGAGTGCCACGTCAGCAGAACAGAGAAAAACAGGGAAGCATTCCGACCAGTGTTGAAATTATACAGAAGACCGTACGATGAGATGATCTACAGGTCAAAGATGAGGCCACCACTTGGCGGATTGATCTCCATCGTCACTCCAAATCTCAGACGTAAACACGTGTCATTGTCTCAACGATTCTGA 1197 50.29 MGKNDHRVEAVLQLLRKQAPLSVKQDKFCNTACVERFLKAKGDNVKKAAKSLRACLSWRDSIGIDHLIADEFSAELADGVAYVAGHDEESRPVHSSGSIHARGCDRDHVKERRPNDHTFRRKSASAFINSLLPMLKIVADFYPRRLHSAFVIDPPSLFTYLWKGVRPFVELSTVTMVISSLDFEDSLEFNDFAAYPRASSLRFDQSLMEPTAKIGSSASSRFSFTVSHHFDSLKPWYLSLTDTSASKVGPTSPSPLGPALISPLNARSLSFASPAARTPRGGINDGNYSSRLTRKSLFPSTPMPPKSAAMASGGGKKVNHPRTPRPSFLQSPAVFFRRECHVSRTEKNREAFRPVLKLYRRPYDEMIYRSKMRPPLGGLISIVTPNLRRKHVSLSQRF 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1681290 1684025 - Cp4.1LG08g04250.1 Cpe08g00256 473222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00256 398 Pfam CRAL/TRIO domain 123 173 IPR001251 -
Cpe08g00256 398 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 134 221 IPR001251 -
Cpe08g00256 398 MobiDBLite consensus disorder prediction 88 115 - -
Cpe08g00256 398 SUPERFAMILY CRAL/TRIO N-terminal domain 4 71 IPR036273 -
Cpe08g00256 398 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 122 398 - -
Cpe08g00256 398 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 3 93 - -
Cpe08g00256 398 MobiDBLite consensus disorder prediction 283 297 - -
Cpe08g00256 398 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 122 398 - -
Cpe08g00256 398 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 3 93 - -
Cpe08g00256 398 MobiDBLite consensus disorder prediction 273 325 - -
Cpe08g00256 398 Gene3D - 116 187 IPR036865 -
Cpe08g00256 398 CDD SEC14 122 187 IPR001251 -
Cpe08g00256 398 Gene3D - 3 98 IPR036865 -
Cpe08g00256 398 SUPERFAMILY CRAL/TRIO domain 124 170 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00256 - - - csv:101206735 612.453
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00256 Cpe-Chr8:1681290 Cpe02g00131 Cpe-Chr2:645119 1.74E-10 dispersed
Cpe03g01429 Cpe-Chr3:11491315 Cpe08g00256 Cpe-Chr8:1681290 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g489 . . . . . Bpe14g01183 . . . . Cma06g01415 . Car06g01220 . Sed02g1245 Cpe08g00256 . Bhi01g00819 Tan10g0850 Cmetu06g1818 . Hepe05g1545 . Lcy11g1540 . . . . . . . Cone14ag0845 . Cone7ag0246 Cone4ag0240 Lsi05g01598 . . Cme06g00614 Blo02g00543 Blo07g00215 Bda11g00573 . . Bpe13g00610 Bma02g00854 Bma06g01552 . Cmo06g01417 . . . . . . . . . . . . . . Cla05g00550 Cam05g0598 Cec05g0609 Cco05g0606 Clacu05g0596 Cmu05g0566 Cre05g0634 . Csa03g01337 Chy06g00584 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004551 1 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00256 Cpe_Chr08 FPKM 3.180835 3.321467 5.183009 4.051022 9.46172 9.61869 7.851196 5.984907 6.852993 7.208147