Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00258 ATGATTAGTCAAGTCCCAAACTGCCCTCGCGAAGTGACCCAATTGCCTCACTTTCACCTTCCGCTGTTCGCAGTCTCGCAGCAGCTTGCGCGCGTCGCCCCTCCGAATCGCTCACCACTTGGCTTCACTCCGAGCACCGAGTCTCAGATGGTGGTTTCAGATTTTATTCCAACATATCGAGCTAGAACTCAATTCACTATTCAACGGGCCTGCGGTTTTGGCTCAAAAGCATTAGCCAAGGGAATCCTTGGAAGCGAGAATGAAAGGGTAGCTCATTCAGATAGCATTGTAAATGGTTCATCCATGCCTCAGCCATCTCCACTGTTTCCTGAGGGTAAACCTCATTCGGTTGCTTATGATGTTGAACTTATAGACGATGATACTTGGGCAGTTTCATTTGGTTTAGCTCGAGCATGGGAAGGGAGAGAGAAGGGCTCATCTGGCTTTGATAATAGATACTTCTTAGAGGATGAAGATCATGATCCAATTGATTATTGTGATTCAGAGTTTGATGATATTGACAACATGAGAATCCGGGGAAATCTCTTCTATAAACTTGATCGAGGTTCCAAAGAGTTTGAAGAATCTAGCTTTGATTTTCATCGGAAGAAAAAATCTATAAAGGAAAGGGAAGATACGCAGCAAAACAAAAGTAAAGTCAATGATAAACCCAATAATCATTTGGCAAGTGGCCATGTAAAGCTTCCTGAACATTTGAAGAACAAATATGTAATAATTGAAAGGGAGGAGAACAATGACTTTGAGAAGAAGCTTAGGACACCCACGTTTAATCAGCTTACTGCCCCTTACCATGAGCCATTTTGTCTTGATATATACATATCAAAAGCCTCTGTTCGAGCCTGCATCATTCACCGGGGCACCAGTAAGGTGGTTGCTGTGGCACATTCAATTTCTAAGGACATGAAATTTGACCTGACTTCAAGGAAGGATTCCTCTGCCTGTGCTGCTGTGGGGGCTGTTTTGGCCCAGAGAGCATTGGCTGATGATATCCACAATCTGGTATACACTCCAAGAAAAGGCGAGAGGATAGAAGGGAAGCTTCAAATCGTGCTTCAGTCTGTCATTGATAATGGGATTAATGTGAAAGTAAAGATTAAGCAGCAAAAGAGACCCAGAAAAATCAAAATGGCAAGCGCAAGTGAGAGTGAACGCAAGGAACCCGTAAATGAGCAAATGGTTGCAAACATGTACGGTGCTTTAAGGTCTGAACTCAATCAGATATATTCAAAAATCACAGAACTCGAAATGGAAGCGAGTGAGCACTCTCTTGTCATTTCTGCAATCGAACCACTTGATCCATCAAGAAGATGCTACAGAATGATTGGGGGAGTGCTGGTGGAAAGAACTATCAAGGAGGTTCTGCCCGCCGTTCAACGCAACAAAGAGGGAATCGAGGAGGTCATTTCCAGACTCAATGAGGCCTTGGAGAAGAAAAAGAAGGAGATTGCTGACTTGGAGGCCAAATACAAGATCAAGATTAGAAAGCCTGATGGCGAGGCTAAGGAGGAAGACAGTGGGCGGAAAGAAGGTGCAGCTCAAGGAGTCCTCGTAGGCCCTGCAGACTATCAATATTTAGTTGAATAA 1605 43.99 MISQVPNCPREVTQLPHFHLPLFAVSQQLARVAPPNRSPLGFTPSTESQMVVSDFIPTYRARTQFTIQRACGFGSKALAKGILGSENERVAHSDSIVNGSSMPQPSPLFPEGKPHSVAYDVELIDDDTWAVSFGLARAWEGREKGSSGFDNRYFLEDEDHDPIDYCDSEFDDIDNMRIRGNLFYKLDRGSKEFEESSFDFHRKKKSIKEREDTQQNKSKVNDKPNNHLASGHVKLPEHLKNKYVIIEREENNDFEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACIIHRGTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEGKLQIVLQSVIDNGINVKVKIKQQKRPRKIKMASASESERKEPVNEQMVANMYGALRSELNQIYSKITELEMEASEHSLVISAIEPLDPSRRCYRMIGGVLVERTIKEVLPAVQRNKEGIEEVISRLNEALEKKKKEIADLEAKYKIKIRKPDGEAKEEDSGRKEGAAQGVLVGPADYQYLVE 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1697950 1703131 + Cp4.1LG08g04180.1 Cpe08g00258 473224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00258 534 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 97 380 IPR005484 GO:0003735|GO:0005840|GO:0006412
Cpe08g00258 534 CDD Ribosomal_L18_L5e 270 366 - -
Cpe08g00258 534 Gene3D - 255 367 - -
Cpe08g00258 534 SUPERFAMILY Translational machinery components 257 366 - -
Cpe08g00258 534 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 276 367 IPR005484 GO:0003735|GO:0005840|GO:0006412
Cpe08g00258 534 PANTHER EXPRESSED PROTEIN 97 380 - -
Cpe08g00258 534 Coils Coil 468 502 - -
Cpe08g00258 534 MobiDBLite consensus disorder prediction 204 218 - -
Cpe08g00258 534 Pfam Prefoldin subunit 398 501 IPR002777 GO:0006457|GO:0016272|GO:0051082
Cpe08g00258 534 Gene3D - 395 503 IPR009053 -
Cpe08g00258 534 MobiDBLite consensus disorder prediction 204 230 - -
Cpe08g00258 534 SUPERFAMILY Prefoldin 401 498 - -
Cpe08g00258 534 Coils Coil 404 424 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00258 K02881 RP-L18, MRPL18, rplR; large subunit ribosomal protein L18 - csv:101213193 518.464
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01434 Cpe08g00258 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00258 Cpe-Chr8:1697950 Cpe11g00958 Cpe-Chr11:8100410 3.49E-28 dispersed
Cpe11g00957 Cpe-Chr11:8097753 Cpe08g00258 Cpe-Chr8:1697950 1.73E-29 wgd
Cpe03g01434 Cpe-Chr3:11508818 Cpe08g00258 Cpe-Chr8:1697950 6.21E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g505 . . . . . Bpe14g01188 . . . . . Cma14g01706 Car06g01217 Car14g01541 . Cpe08g00258 Cpe03g01434 Bhi01g00814 . . . Hepe05g1550 . . . . . . . . . Cone14ag0854 . . . Lsi05g01603 . . . . . . . . . Bma02g00847 . . . Cmo14g01749 . . . . . . . . . . . . . Cla05g00544 Cam05g0595 Cec05g0605 Cco05g0602 Clacu05g0592 Cmu05g0562 Cre05g0631 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003116 1 3 2 2 2 1 3 1 1 1 1 1 2 1 2 2 1 3 2 1 2 2 2 1 1 1 1 4 1 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00258 Cpe_Chr08 FPKM 15.45067 19.422625 65.651657 69.236412 3.892716 5.282542 5.277041 52.849728 55.651566 57.708694