Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00262 ATGTCTGGGGATCCAGTGGAGCCTGAAGTTCTTGAGAATATAAATTGCATCACACCTAAGTTAAATAAAAGTGATCTGATCCTTAGGCCAGTTTCTGAAGATGAAGGAGGGGAGGGTTTGCCATATGCTCCTGAAAATTGGCCCAATCCCGGTGTGCGAGGAAGACAAGATCCATGCCCTCTTCCCTCAAAAGAGACGAAAGAATGCACAGCATCTGATTCCCAGATTGTGGGTTGCAAGGCTGGAAATATAAACTGTAATAGTTTATCTCTTGTAGAAAACTCATCTTTATTAAAATCCATGTCCTGTGATATTTGCTGCAGCGAATCTCGGTTTTGCCGCGATTGCTGCTGTATACTTTGTTCCAAGATTATAGACATGACCAGGAAAAGTTATAGCTATATTAAATGTGAAGCAAAGGTAGGTGATGGGGATATTTGTGGACATCATGCTCATATAAAATGTGGTCTCAAATCATATATGGCTGGGACAGTTAGGGGGAGCATTGGATTGGATGCTGAGTATTATTGTCGACGTTGTGATGCTAGAACAGATTTGGTATCACATGTTGAAACATTTTTGCAGTTATGTCTATCAACCGATTGTTGTGATGACATTGAGGAGTTCTTAGGCATTGGTTTCCGCATTTTGCGTGGTTCACACAAAATGAGAGCAAAGGAACTGTTGAGACATATTGAATTGAACATTGCAAAGCTTAAAACTGGGACTTGCTTGGAACATATATGGAAGATGGATGAAGACATCTCAGCGAATTGCACTGATGCAAATGGTAGCGCGAATTCTACAGAAAGTTCTCATGGCACTTCAGACTCCTTTATAAGCTCAGAATGGACTATGTCCACCCCTTTTGATCATTGGACTGAATCCCTAAAACTGGAAGACGAGATTGAACAGGTTCTGCAGGCACTGAAGAGATCACAAGAGTTCGAGTACAGTTTGGCAGAAGAAAAGCTTCTGTTACATAAAAATTATCTACATAATCTATTTCTGCAACTCGGCAAGGAACAAACTGAACTCAGACATCGAACGTCATCAACTAGACAAAAGGCCTTTCAGAATAATGTAACAAATAGAGTGGATCAAATAAAACGAGAAGTAAAGAAACTGAAGAGAATGGAAAAGGTTGCTGATGGATTTGGACGAACTCCTAAAGATATCCTGAAGGAGGACTTTGGTTTTGAAGTTGATTAG 1212 40.26 MSGDPVEPEVLENINCITPKLNKSDLILRPVSEDEGGEGLPYAPENWPNPGVRGRQDPCPLPSKETKECTASDSQIVGCKAGNINCNSLSLVENSSLLKSMSCDICCSESRFCRDCCCILCSKIIDMTRKSYSYIKCEAKVGDGDICGHHAHIKCGLKSYMAGTVRGSIGLDAEYYCRRCDARTDLVSHVETFLQLCLSTDCCDDIEEFLGIGFRILRGSHKMRAKELLRHIELNIAKLKTGTCLEHIWKMDEDISANCTDANGSANSTESSHGTSDSFISSEWTMSTPFDHWTESLKLEDEIEQVLQALKRSQEFEYSLAEEKLLLHKNYLHNLFLQLGKEQTELRHRTSSTRQKAFQNNVTNRVDQIKREVKKLKRMEKVADGFGRTPKDILKEDFGFEVD 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1711377 1716344 + Cp4.1LG08g04160.1 Cpe08g00262 473228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00262 403 MobiDBLite consensus disorder prediction 34 55 - -
Cpe08g00262 403 Coils Coil 359 379 - -
Cpe08g00262 403 Pfam PHD - plant homeodomain finger protein 82 213 IPR032881 -
Cpe08g00262 403 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 66 402 - -
Cpe08g00262 403 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 3 51 - -
Cpe08g00262 403 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 3 51 - -
Cpe08g00262 403 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 66 402 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00262 - - - cmo:103483705 541.576
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01438 Cpe08g00262 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00262 Cpe-Chr8:1711377 Cpe05g01398 Cpe-Chr5:9811770 1.21E-08 dispersed
Cpe03g01438 Cpe-Chr3:11523719 Cpe08g00262 Cpe-Chr8:1711377 5.58E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g515 . . . . . Bpe14g01191 . . . . . Cma14g01710 . Car14g01545 . Cpe08g00262 Cpe03g01438 Bhi01g00803 Tan10g0836 . . . . . . . . . . . . . . Cone7ag0258 . . . . . . . . . . . Bma02g00840 . . . Cmo14g01754 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003503 1 5 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 4 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00262 Cpe_Chr08 FPKM 15.380387 18.249022 8.208762 9.632542 8.808801 9.269896 7.520901 15.575773 13.876481 14.735399