Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00265 ATGGAAACGCTCAGCCACACAACCTCCATCCTCCCTCTTCATCTCCCCCCATACCCCACCAGACCCACCGCTCTCTCCGCCGCTCTCTCCTCCGCCACCAGCCTCCTCCACATCAAACAAGTCCACGCTCAAATCCTCCGCTCCAAATTCGAACGCTCCGATTCCGATTCCCTTCTTTTCAAACTGATTCTTTCCTCTTGTGCTCTCTCGCCCAGCCTCGACTATGCCCTCTCTGTGTTCGATCAAATTCCTGAGCCCAAGACCCGTTTCTGCAACAAGCTTCTGCGTGAATTATCTCGAGGTTCTGAGCCGGAGAATGCGCTTTTTTTATACGAGAAGATGAGGGCTGAGGGTCTGAGTTTGGATAGGTTCTGCTTCCCACCCCTGTTAAAAGCGGCCTCGCGGAATCTTTCCTTGAGAACTGGGATGGAGATTCATGGACTCGCGTCGAAGCTGGGATTTGGTTCAGACCCATTTGTGGAGACGGGATTGATTAGAATGTATGCTGCCTGTAGAAGGATAATGGAAGCCCGGTTGGTGTTTGATAAAATGTCTCAGAGGGATGTCGTCACTTGGAGCATCATGATTGATGGGTATTGCATAAGTGGTTATTATGATCTCGCCTTTCAACTCTTTGAAGAAATGAAGAGAACAGGCTTGGAACCAGATGAAATGATTCTTTCAACTATTCTTTCTGCCTGCGCCCGAGCTGGAAATTTGGATTTTGGAACAAAAATACACGAGTTCATAACTAAGAACAATATTGTCATGGATCCTCACTTACAAAGTGCTCTCATCAAGATGTATGCAAGTTGTGGCTCCACGGACTTGGCTTGGGATCTGTATGAAAAGATAACCCCTAAGAACATGGTTATTTCGACTGCCATGGTTTCTGGGCTTGCAAAAGGTGGACAGATTGGTGATGCTCGCTGTGTGTTTGATCAAATGGTGGAGAAGGACTTGATATGTTGGAGTGCAATGATTTCTGGATATACTGAGAGTGATTGCCCTCAAGAGGCTCTTGTACTGTTCAAGAAAATGCAACAACTGGGAATGAAACCTGATATAGTATCAACTAACATCTTGATCCTAGAGACATGA 1101 46.59 METLSHTTSILPLHLPPYPTRPTALSAALSSATSLLHIKQVHAQILRSKFERSDSDSLLFKLILSSCALSPSLDYALSVFDQIPEPKTRFCNKLLRELSRGSEPENALFLYEKMRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLIRMYAACRRIMEARLVFDKMSQRDVVTWSIMIDGYCISGYYDLAFQLFEEMKRTGLEPDEMILSTILSACARAGNLDFGTKIHEFITKNNIVMDPHLQSALIKMYASCGSTDLAWDLYEKITPKNMVISTAMVSGLAKGGQIGDARCVFDQMVEKDLICWSAMISGYTESDCPQEALVLFKKMQQLGMKPDIVSTNILILET 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1721130 1723647 + Cp4.1LG08g04190.1 Cpe08g00265 473231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00265 366 TIGRFAM PPR: pentatricopeptide repeat domain 190 224 IPR002885 -
Cpe08g00265 366 TIGRFAM PPR: pentatricopeptide repeat domain 322 356 IPR002885 -
Cpe08g00265 366 TIGRFAM PPR: pentatricopeptide repeat domain 294 321 IPR002885 -
Cpe08g00265 366 Pfam PPR repeat family 187 236 IPR002885 -
Cpe08g00265 366 Pfam PPR repeat family 319 363 IPR002885 -
Cpe08g00265 366 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Cpe08g00265 366 Pfam PPR repeat 263 285 IPR002885 -
Cpe08g00265 366 Gene3D Tetratricopeptide repeat domain 16 135 IPR011990 GO:0005515
Cpe08g00265 366 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Cpe08g00265 366 Gene3D Tetratricopeptide repeat domain 248 366 IPR011990 GO:0005515
Cpe08g00265 366 Gene3D Tetratricopeptide repeat domain 145 247 IPR011990 GO:0005515
Cpe08g00265 366 PANTHER - 138 305 - -
Cpe08g00265 366 PANTHER - 33 200 - -
Cpe08g00265 366 PANTHER - 301 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00265 - - - bhj:120088878 625.165
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00265 Cpe-Chr8:1721130 Cpe04g00057 Cpe-Chr4:550468 2.36E-14 dispersed
Cpe08g00265 Cpe-Chr8:1721130 Cpe08g01246 Cpe-Chr8:9019319 5.90E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g518 . . . . . . . . . . Cma06g01402 . Car06g01210 . . Cpe08g00265 . Bhi01g00798 . . . . . . . . . . . . . Cone14ag0857 . . . Lsi05g01611 . . . . . . . . . . . . Cmo06g01406 . . . . . . . . . . . . . . Cla05g00537 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014354 0 1 0 0 0 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 0 0 1 1 0 1 1 1 1 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00265 Cpe_Chr08 FPKM 22.260416 18.749857 220.129852 204.923691 22.12978 13.305011 22.300627 68.134476 77.012642 73.55912